| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_5017 |
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| Symbol | ligB |
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| ID | 5872832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 5604372 |
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| End bp | 5606072 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641550155 |
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| Product | NAD-dependent DNA ligase LigB |
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| Protein accession | YP_001671237 |
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| Protein GI | 167036006 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.581367 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGTACC TGCTGTTGTT CGCCATGCTG TTTGCGCTAA ATACCCCACT GGCCTGGGCC
GCCTCATGCC CCGACTGGAC CCCGCAAAAG GCCGAGGCTG AAGCCGCGCA ACTACAGGCC
ACCCTTACCG GCTGGGACGA GCACTACCAT CGCCAGGGTA TCGCGCTGGT GGCTGATGAG
CTTTACGACC AGAGCCGCCA GCGCCTGGTG CACCTGCAGC AGTGCTTTGG CCTCGCGCCC
AGCCCGTCAC CCTTGACCAG CGCTCGCGGT CCACTCCCTC ACCCCGTGCC GCATACCGGT
GTCGACAAGC TGGCGGACCG CCAGGCCGTG GCACGCTGGA TGGCCGGGAA AACCGGGGTA
TGGGTACAGC CCAAGTTCGA CGGTGTCGCA GCTTCCCTCA TTTATCGACA AGGCCAATTG
GTACAGCTGA TCAGCCGGGG GGACGGGCTG CAGGGGCATG ACTGGAGCAG GCACATTCCC
CAGCTCGGTG CAGTCACCCG GCAGTTGCCT CAGGCGATTG ACCTGCACTT GCAGGGTGAG
CTGTACCTGC GCCTGAACGA ACACGTACAG GCCAAGGCAG GCAGTGCCAA CGCTCGCGGT
ACCGTGGCCG GGCTGCTCGC ACGCAAACAA CTGACTCGCG AGCAAGGGAA CACGATCGGC
CTGTTCGTGT GGGGCTGGCC GCATGGCCCC GAGCGACAGG CCGATCGCCT CGCGCAGCTG
GCACAACTGG GCTTCCCGGA TAGCCAGCAT TACAGTATCG CCGTCGACAC GCTGGAGGAT
GCAGCGCGCT GGCGTGAGCA CTGGTACCGT TCACCCCTGC CCTTTGCCAG CGACGGCGTG
ATCCTGCGCC TGGGCAGCCG GCCGCCTGCC GAGCGCTGGC AGGCCAAGGC GCCGTACTGG
ATCGCCGCCT GGAAATACCC CTATGTACAA GCGTTGGCCG AAGTACGCGA CGTGCGCTTT
CGGGTTGGCC GCACTGGCAG GATCACGCCC ATTGCGCATG TGCAGCCGGT AACCCTCGAT
GACCGGCGCA TCACCCAGGT CAGCCTCGGC TCGCTGGCGC GTTGGCAAGC CCTGGATATT
CGCCCCGGTG ACCAGGTCGC TATCAGCCTC GCCGGGCTGA CCATCCCTCG CCTTGAGCAC
GTCGTGCACC GCGCGGTCGA ACGCCAACCA CTGGGCGCGC CTGCACCCGG TCGGCATCAT
GCCCTCAGTT GCTGGCAGCC CAGCGAAGGC TGCGAGGAAC AATTCATCGC CCGGCTCACC
TGGCTCAGCG GCAAACAGGG CTTGGCCCTC CCACGTACCG GGCCCGGCAC ATGGCGTCGG
CTGGTCGATG CGGGCCTGGT AACTTCGATG ACCGATTGGC TGCAGCTCGA TGCCGAACGC
CTGCAGCAGG TGCCCGGCAT CAGCAGCCTT ACAGCGGCCC AACTGCTGGG CAGTTTCGAC
CAAGCCCGCT CACGCCCCTT CGATCAGTGG CTGCGCGGCC TTGGCGCGCC CATTGGCAAG
CATTTGCAAC TGACAGGCGG CTGGCAAGAA ATGGCTTCGC GCAGCGCGGG TCAATGGCAA
ACAGTGCCCG ACATCGGCGT AAAACGCTCG CGTCAGCTTG TGGGTTTCTT CGCGGCCGCG
GAGGTGCAAG CCATTGCCAC ACGGTTGGCG GAATCCGGCA TTGAAGGGTT TTCGCCCCCC
CCTGAGCGCA TCGAGCAATG A
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| Protein sequence | MPYLLLFAML FALNTPLAWA ASCPDWTPQK AEAEAAQLQA TLTGWDEHYH RQGIALVADE
LYDQSRQRLV HLQQCFGLAP SPSPLTSARG PLPHPVPHTG VDKLADRQAV ARWMAGKTGV
WVQPKFDGVA ASLIYRQGQL VQLISRGDGL QGHDWSRHIP QLGAVTRQLP QAIDLHLQGE
LYLRLNEHVQ AKAGSANARG TVAGLLARKQ LTREQGNTIG LFVWGWPHGP ERQADRLAQL
AQLGFPDSQH YSIAVDTLED AARWREHWYR SPLPFASDGV ILRLGSRPPA ERWQAKAPYW
IAAWKYPYVQ ALAEVRDVRF RVGRTGRITP IAHVQPVTLD DRRITQVSLG SLARWQALDI
RPGDQVAISL AGLTIPRLEH VVHRAVERQP LGAPAPGRHH ALSCWQPSEG CEEQFIARLT
WLSGKQGLAL PRTGPGTWRR LVDAGLVTSM TDWLQLDAER LQQVPGISSL TAAQLLGSFD
QARSRPFDQW LRGLGAPIGK HLQLTGGWQE MASRSAGQWQ TVPDIGVKRS RQLVGFFAAA
EVQAIATRLA ESGIEGFSPP PERIEQ
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