Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_5004 |
Symbol | |
ID | 5872819 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 5590958 |
End bp | 5591695 |
Gene Length | 738 bp |
Protein Length | 245 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641550142 |
Product | amino acid ABC transporter, periplasmic amino acid-binding protein |
Protein accession | YP_001671224 |
Protein GI | 167035993 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 0.828614 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGCCAC TGCTTTGTGT TCTGGGATTA CTGGCAATGA TGCTGGCAAC ACCCGCCCCG GGTCACGACA GGCTACGCCT GGTGGCCGAC AACTGGCCAC CGTTCACCGA TGCCAACATG GCGGGTGGCG GCCTGGCGAC CAGCATCGTC ACCACGGCAT TGGCCCGTGC CGGCTACGCC AGCGGCTATG AAGAAGTGCC GTGGGCGCGG GCGTTGCTGG GGGTTGGTGA AGGGCGCTAC GACGTGCTGA TCAATGCCTG GTACAACGAC TCACGCGCCA ACATCGGGCA ATTTTCCAAA GCCTATCTGA GTAACCGCAT TCGCCTGCTG CAGCGCAAGG GCGAAGCGTT CCACTACAAG CACCAGTCTG ACTTGTACCC CTACAGCATC GCCGTGGTGC GTGATTACGC CTACTCACCA GAATTCGACG GCGATACTCG CCTGCACAAG GTGCCGGTGC GCAACTTCTC TTCCGCGGTG CGCATGCTGG CGGCAGGGCG GGTGAACCTG GCGGTGGAGG ACGAGTACGT GGCGCGTTAC AACCTGCAGC GCGAGCCGCA GGACGTGCGT GATGGGGTGA TGCTGGTGGA GCCGCCGTTG GGGGAAAACA CCCTGCACAT CCTGGTCAGC CTGAAGCACC CGGAGCATCA GCGAATCGTC GAGCGTTTCG AGCAGGCGAT TGCGGCGATG AAGGCCGATG GCAGCTATGC CCGGCTGCTG CGCCAACATG GCTTTTGA
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Protein sequence | MRPLLCVLGL LAMMLATPAP GHDRLRLVAD NWPPFTDANM AGGGLATSIV TTALARAGYA SGYEEVPWAR ALLGVGEGRY DVLINAWYND SRANIGQFSK AYLSNRIRLL QRKGEAFHYK HQSDLYPYSI AVVRDYAYSP EFDGDTRLHK VPVRNFSSAV RMLAAGRVNL AVEDEYVARY NLQREPQDVR DGVMLVEPPL GENTLHILVS LKHPEHQRIV ERFEQAIAAM KADGSYARLL RQHGF
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