| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_5003 |
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| Symbol | |
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| ID | 5872818 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 5588741 |
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| End bp | 5590924 |
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| Gene Length | 2184 bp |
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| Protein Length | 727 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641550141 |
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| Product | YccS/YhfK family integral membrane protein |
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| Protein accession | YP_001671223 |
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| Protein GI | 167035992 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1289] Predicted membrane protein |
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| TIGRFAM ID | [TIGR01666] hypothetical membrane protein, TIGR01666
[TIGR01667] integral membrane protein, YccS/YhfK family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.481214 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCATCGA GCTCGTTCCG TCAGTCACTG CGTCGCCTGT GGGGCCAAGA CAAGTTCAGC
TACAGCATCC GGGTCACCAT CGCCCTCACC GGCAGCCTGG CCCTGTGCTG GTACCAGAAC
GAGATGGCCC TGCTGATTCC GCTGTTCCTC GGCATCATCG CCAGCGCCCT GGCCGAAACC
GACGACAGCT GGCAAGGCCG CCTTAGCGCC TTGGCCGTTA CCCTGGTGTG TTTCGCCATC
GCTGCGCTGG CGGTCGAACT ACTGTTCCCC TACCCCTGGG TCTTTGCCAT CGCCCTGGCC
CTGGCGGCGT TTGGTCTGAC CATGCTTGGC GCCTTGGGCG AGCGCTATGG TGCGATTGCC
TCGGCGACAC TGATCACGGC GGTTTACACC ATGATCGGTG TGGACCAGCG CGGCGGCCAA
GTGACGGACT TCTGGCACGA GCCGCTGCTG CTGGTGGCGG GTGCGGCCTG GTACGGGCTG
CTTTCAGTAC TTTGGCAGGC GCTGTTTTCC AACCAGCCGG TGCAGCAGAG CCTGGCCAAG
CTGTTCTACG AACTGGGCAG CTACCTCAAG CTGAAGGCCA GCCTGTTCGA ACCGATCCGC
ACCCTCGACG TCGAGGCCCG GCGCCTGGAG CTGGCCCAAC AGAATGGCAA GGTGGTGGCC
GCGCTGAACG CAGCCAAGGA AATCATCCTG CACCGGGTGG GCAACAGCCA ACCGAACTCG
AAGGTCAGCC GTTACCTCAA GCTGTACTTC CTGGCCCAGG ACATTCACGA ACGGGTCAGT
GCCTCGCACT ACCCCTACAA CGCACTGACC GAGGCGTTTT TCCACAGTGA CGTGATGTTC
CGCTGCCAGC GCCTGCTGCG TAAGCAGGGT TCATCCTGCC AGGAGCTGGC CCGCTCGATC
CGCCTGCGCC AGCCATTCGT GCTGGCAAGC GGTTATCCCG AAGCCCTCGA GGACCTCAAC
GCTTCACTTG AGCACCTGCG TATCCAGAGC AACCCGGCCT GGCGTGGCCT GTTGCGCTCG
CTGCGGGCGC TGGCCGCCAA CCTGGCAACG CTGGACCGCC AGCTCAGTGC CGCCAGCAAC
CCTGACAGCC TGGCCGACGC CAGCGACAGC AGCCTGCTCG ACCGCTCGCC ACGCTCGCTG
AAGGATGTGT GGACGCGCCT GCGCACCCAG CTCACACCGA CCTCGTTGCT GTTCCGCCAC
GCCTTGCGCC TGCCGCTGGC GCTGTCGATC GGCTACGGCA TGGTGCACCT GATTCACCCG
ACCCAGGGCT ACTGGATCAT CCTCACCACG CTGTTCGTGT GCCAGCCCAA CTACGGTGCA
ACCCGGCGCA AGCTGGTGCA GCGCATCTTC GGCACCGCTG TCGGCCTGAC GGTGGGCTGG
GCCTTGTTCG ACCTGTTCCC CAACCCGGTC ATCCAGTCGC TGTTCGCCGT GGTCGCCGGG
GTGGTGTTCT TCGTCAACCG CACCACCCGC TACACCTTGG CCACGGCCGC GATCACCCTG
ATGGTGCTGT TCTGCTTCAA CCAGATCGGC GATGGCTACG GCCTGTTCCT GCCACGCCTG
TTCGATACCC TGGTGGGCAG CCTGATCGCC ATCCTTGCGG TGTTCCTGTT CTTGCCTGAC
TGGCAAGGGC GACGGCTGAA CAAGGCGCTG GCCAATACCC TGGCCTGCGC CAGCGTGTAC
CTGCGCCAGA TCATGCAGCA GTATGCCCAT GGCAAGCGTG ACGACCTGGC TTACCGCCTG
GCCCGGCGCA ATGCTCACAA CGCCGACGCG GCACTGTCCA CCACCTTGGC CAACATGCTG
ATGGAGCCGG GACATTTCCG TAAGGAGGCC GACGTTGGCT TCCGCTTCCT GGTGCTGTCG
CACACCTTGC TCAGCTACCT CTCGGGGCTG GGCGCGCACC GCGACACGGC GTTGCCGGCG
CAGGTGCAGG AGCAGTTGAT CGAAGGTGCC GGGCAAAGCC TGGCCAGCAG CCTGGACGAG
ATCGCCAACG GTTTGGCGGC GCGGCTGCCG ATCGCGATTC ACAGTGATGC CGAAGAAGCA
CTGGCCAATG CCCTGGAGCA AATGCCGGAA GAACTGGATG AGCATCAGCG GCTGGTGCAG
ACGCAGTTGG CATTGATCTG CCGGCAGTTG GGGCCATTGA GGACCTTGGC GGCGCACCTG
ATCAAGGAAG GTGCGCCGGC CTGA
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| Protein sequence | MSSSSFRQSL RRLWGQDKFS YSIRVTIALT GSLALCWYQN EMALLIPLFL GIIASALAET
DDSWQGRLSA LAVTLVCFAI AALAVELLFP YPWVFAIALA LAAFGLTMLG ALGERYGAIA
SATLITAVYT MIGVDQRGGQ VTDFWHEPLL LVAGAAWYGL LSVLWQALFS NQPVQQSLAK
LFYELGSYLK LKASLFEPIR TLDVEARRLE LAQQNGKVVA ALNAAKEIIL HRVGNSQPNS
KVSRYLKLYF LAQDIHERVS ASHYPYNALT EAFFHSDVMF RCQRLLRKQG SSCQELARSI
RLRQPFVLAS GYPEALEDLN ASLEHLRIQS NPAWRGLLRS LRALAANLAT LDRQLSAASN
PDSLADASDS SLLDRSPRSL KDVWTRLRTQ LTPTSLLFRH ALRLPLALSI GYGMVHLIHP
TQGYWIILTT LFVCQPNYGA TRRKLVQRIF GTAVGLTVGW ALFDLFPNPV IQSLFAVVAG
VVFFVNRTTR YTLATAAITL MVLFCFNQIG DGYGLFLPRL FDTLVGSLIA ILAVFLFLPD
WQGRRLNKAL ANTLACASVY LRQIMQQYAH GKRDDLAYRL ARRNAHNADA ALSTTLANML
MEPGHFRKEA DVGFRFLVLS HTLLSYLSGL GAHRDTALPA QVQEQLIEGA GQSLASSLDE
IANGLAARLP IAIHSDAEEA LANALEQMPE ELDEHQRLVQ TQLALICRQL GPLRTLAAHL
IKEGAPA
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