| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_5001 |
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| Symbol | |
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| ID | 5872816 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 5585962 |
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| End bp | 5587347 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641550139 |
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| Product | ATP-dependent RNA helicase DbpA |
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| Protein accession | YP_001671221 |
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| Protein GI | 167035990 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.286134 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCACCG AATCCACCGC CTTTGCCACT CTGCCGTTGT CCACCGCCAT GCTGGCGAAC
CTGGACGCCC TCGGCTATGC CTCGATGACG CCGATCCAGG CCCAGAGCCT GCCAGTCATC
CTCAAAGGCC AGGACCTGAT CGCCCAGGCC AAGACCGGCA GTGGCAAGAC CGCCGCCTTC
GGCATCGGCC TGCTCAACCC GATCAACCCG CGCTACTTCG GCTGCCAGGC ACTGGTGCTG
TGCCCTACCC GCGAGCTTGC CGACCAGGTG GCCAAGGAAC TGCGCCGCCT GGCCCGCGCT
GAGGACAACA TCAAGATCCT CACCCTGTGC GGCGGCGTTT CGCTGGGCCC GCAAATCGCT
TCGCTGGAGC ACGGTGCGCA CATCATCGTC GGCACCCCAG GGCGCATCCA GCAACACCTG
GACAAAGGCA CCCTGGTGCT CGATGGCCTC AACACCCTGG TACTCGACGA AGCCGACCGC
ATGCTCGACA TGGGCTTCTT CGATGCCATC GCCAGCATCA TCGGCAAGAC CCCGGCGCGC
CGCCAGACCC TGCTGTTCTC GGCCACTTAC CCGGCTGGCA TCAAGCAGCT GGCCGCCGAC
TTCATGCGCA ACCCGCAGCA AGTCAAGGTC GAGAGCCTGC ACACCGACAA CCAGATCGAG
CAGCGCTTCA TCGAGATCGA CCCGCAGCAC CGCCTGGAGG CCGTCACCCG CGTGCTCGGC
CACTACCGCC CGCAGTCCTG CGTGGCGTTC TGCTTCACCA AGCAGCAGTG CGAGGATGTG
GTTGCCCACC TGACCGCCAA GGGCATCGTC GCCCAGGCCC TGCACGGCGA CCTGGAGCAA
CGTGACCGCG ACCAGGTGCT GACCATGTTC GCCAACCGCA GCAGCTCGGT GCTGGTGGCG
ACCGACGTGG CCGCGCGTGG CCTGGACATC GATGGCCTGG ACATGGTCAT CAACGTGGAA
CTGGCACGTG ATGCGGAAAT CCACGTGCAC CGTGTGGGTC GTACTGGCCG TGCTGGCGAG
AAAGGGATCG CGGTCAGCCT GGTGGCACCG GCCGAAGGCC ACCGTGCCCA AGCCATCGAA
GACCTGCAGA AAAGCCCGCT GCGCTGGGAC TCGCTGGACA GCCTGAAGAA CAAGGGCGGC
GAACCACTGC TGCCGGTGAT GACCACGCTG TGCATTGCCG CTGGCCGCAA GGACAAGCTG
CGCCCTGGCG ACATTCTCGG TGCGCTGACC GGTGATGCCG GGATCCCAGG CAAGCAGGTG
GGCAAGATCG CCATCTTCGA CTTCCAGGCG TTCGTGGCCG TGGAGCGGGC GTTGGCCAAA
CAGGCCATGC AGCGGCTGAA CAGCGGCAAG ATCAAGGGTC GCGCCCTGAA AGTCCGCATT
ATCTAA
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| Protein sequence | MTTESTAFAT LPLSTAMLAN LDALGYASMT PIQAQSLPVI LKGQDLIAQA KTGSGKTAAF
GIGLLNPINP RYFGCQALVL CPTRELADQV AKELRRLARA EDNIKILTLC GGVSLGPQIA
SLEHGAHIIV GTPGRIQQHL DKGTLVLDGL NTLVLDEADR MLDMGFFDAI ASIIGKTPAR
RQTLLFSATY PAGIKQLAAD FMRNPQQVKV ESLHTDNQIE QRFIEIDPQH RLEAVTRVLG
HYRPQSCVAF CFTKQQCEDV VAHLTAKGIV AQALHGDLEQ RDRDQVLTMF ANRSSSVLVA
TDVAARGLDI DGLDMVINVE LARDAEIHVH RVGRTGRAGE KGIAVSLVAP AEGHRAQAIE
DLQKSPLRWD SLDSLKNKGG EPLLPVMTTL CIAAGRKDKL RPGDILGALT GDAGIPGKQV
GKIAIFDFQA FVAVERALAK QAMQRLNSGK IKGRALKVRI I
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