| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4996 |
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| Symbol | putA |
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| ID | 5872811 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 5575291 |
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| End bp | 5579244 |
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| Gene Length | 3954 bp |
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| Protein Length | 1317 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641550134 |
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| Product | trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
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| Protein accession | YP_001671216 |
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| Protein GI | 167035985 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
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| TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGACGA CCACCCTTGG GGTCAAACTC GACGACCCGA CCCGTGAGCG ACTCAAAGCA
GCTGCGCAGT CCATTGACCG CACGCCGCAC TGGTTGATCA AGCAAGCGAT CTTCAACTAT
CTGGAGAAGC TCGAGGGTGG TGCCACCCTG ACCGAACTCA ACGGTCATGT CAGCAACCTG
GCCGATGATG CCGGTGAAGT CCAGGCCGAC CACAGCCACC AGTGCTTCCT CGAATTCGCC
GAGAGCATCC TGCCGCAGTC GGTACTGCGC TCGGCGATCA CTGCCGCCTA CCGCCGCCCC
GAGCAGGAAG TGGTGCCGAT GCTGCTGGAG CAGGCACGCC TGAGCGCGCC ATTGGCCGAA
GCCACCAACA AGCTGGCAGC CGGCATCGCC GAAAAACTGC GCAACCAGAA GAGCGCTGGC
GGCCGTGCCG GCATCGTCCA GGGCCTGTTG CAGGAGTTCT CGCTGTCGTC CCAGGAAGGC
GTGGCACTGA TGTGCCTGGC CGAAGCGCTG CTGCGCATCC CTGACAAGGG CACCCGCGAC
GCGCTGATCC GCGACAAGAT CAGCACCGGC AACTGGCAGC CGCACCTGGG CAACAGCCCG
TCGCTGTTCG TCAACGCCGC TACCTGGGGC CTGCTGCTGA CCGGCAAGCT GGTCAGCACC
CATAACGAAT CCGGCCTCAC CTCCTCGCTC ACCCGCATCA TCGGCAAGAG CGGCGAGCCG
ATGATCCGCA AGGGCGTCGA CATGGCCATG CGCCTGATGG GCGAGCAGTT CGTCACCGGT
GAAACCATCG CCGAAGCCCT GGCCAACGCC AGCCGCTTCG AGGCCAAGGG TTTCCGCTAT
TCCTACGACA TGCTCGGCGA AGCCGCGCTG ACCGAACACG ACGCGCAGAA GTACCTGGCG
TCCTACGAGC AGGCCATCCA CTCGATTGGC AAGGCCTCCC ATGGCCGCGG CATCTATGAA
GGCCCAGGTA TCTCGATCAA GCTGTCGGCA CTGCACCCAC GCTACAGCCG TGCCCAGTAC
GAGCGCGTGA TGGAAGAGCT GTACCCGCGC CTGCTGTCGC TGACCCTGCT GGCCAAGCAG
TACGACATCG GCCTGAACAT CGACGCCGAA GAGGCCGACC GCCTGGAGCT GTCGCTCGAC
CTGCTCGAGC GCCTGTGCTT CGAACCTTCG CTGGCGGGCT GGAACGGCAT CGGTTTCGTC
ATCCAGGCCT ACCAGAAGCG CTGCCCGTAC GTGATCGACT ACGTCATCGA CCTGGCCAAG
CGCAGCCGCC ACCGCCTGAT GATCCGCCTG GTTAAAGGCG CCTACTGGGA CAGCGAGATC
AAGCGTGCCC AGGTCGAAGG CCTGGAAGGC TACCCGGTGT ACACCCGCAA GGTGTACACC
GACGTGTCCT ACGTTGCCTG CGCCCGCAAG CTGCTGGCCG TACCAGAAGC CATCTACCCA
CAGTTCGCCA CCCACAACGC CCACACCCTG TCGGCCATCT ACCACATCGC CGGGCAGAAC
TATTACCCGG GGCAGTACGA GTTCCAGTGC CTGCACGGCA TGGGTGAGCC GCTGTATGAG
CAAGTGGTCG GCAAGATTGC CGATGGCAAG CTGAACCGCC CGTGCCGCGT CTATGCGCCG
GTCGGCACCC ACGAAACACT GCTGGCCTAC CTGGTACGCC GCCTGCTGGA AAACGGCGCC
AACACCTCGT TCGTCAACCG CATCGCCGAC CACTCCATCT CCATCCAGGA ACTGGTCGCC
GACCCGGTCG CCAGCATCGA GCGCATGGGC ACCCAGGAAG GCAGCATCGG CCTGCCGCAC
CCACGCATCC CGCTGCCGCG CGACTTGTAT GGCAACGAGC GGGCCAACTC GGCCGGCATC
GACATGGCCA ACGAACACCG CCTGGCGTCG CTGTCCTGCG CCATGCTGGC CACCGCTCAC
AACGACTGGA AAGCCGCCCC GCTGCTGGCC TGCGCCGCCA GCGATAGCGC TGCCGTGCCG
GTGCTGAACC CGGCCGACCT TCGCGATGTG GTGGGCCATG TGCAGGAGGC CACCGTCGCC
GATGTCGACA ACGCCATCCA GTGTGCACTG AACGCCGCAC CGATCTGGCA GGCCACCCCA
CCCGCCGAAC GTGCCGCCAT TCTGGAGCGC ACCGCCGACC TGATGGAGGC CGAGATCCAA
CCGCTGATGG GCCTGCTCAT CCGCGAAGCC GGCAAAACCT TCGCCAACGC CATCGCAGAG
GTGCGTGAAG CCGTGGACTT CCTGCGCTAC TACGCGGTGC AGGCACGCAA CGACTTCAGC
AACGACGCCC ACCGCCCGCT GGGCCCGGTG GTGTGCATCA GCCCATGGAA CTTCCCGCTG
GCGATCTTCA CCGGCCAGGT GGCCGCAGCC CTGGCTGCCG GCAACCCGGT ACTGGCCAAG
CCCGCCGAGC AAACCCCGCT GATCGCCGCC CAGGCCGTGC GCCTGCTGCT GGAAGCCGGC
ATCCCCGAGG GCGTGCTGCA GTTGCTGCCA GGCCGCGGTG AAACCGTCGG TGCTGGCCTG
GTCGGTGACG AGCGCGTCAA AGGCGTGATG TTCACCGGCT CCACCGAAGT CGCCCGCCTG
CTGCAGCGCA ACGTCGCCGG TCGCCTGGAC AACCAGGGCC GCCCGATCCC GCTGATCGCC
GAAACCGGTG GCCAGAACGC GATGATCGTC GACTCCTCGG CACTGACCGA GCAGGTGGTG
ATCGACGTGG TTTCCTCGGC CTTCGACAGC GCTGGCCAGC GTTGCTCGGC CCTGCGCGTA
CTGTGCCTGC AGGAAGACTC CGCCGACCGC GTGATCGAAA TGCTCAAGGG CGCCATGGCC
GAAAGCCGCC TGGGCTGCCC GGACCGCCTG GCCGTGGACA TTGGCCCGGT GATCGACGCC
GAAGCCAAGG CCGGCATCGA GAAGCACATC CAGGGCATGC GTGAAAAAGG CCGCTCGGTC
TATCAGGTTG CCATTGCCGA TGCTGCCGAG ATCAAGCGCG GCACCTTCGT CATGCCAACC
CTGATCGAGC TGGACAGCTT CGACGAGCTC AAGCGTGAAA TCTTCGGCCC GGTACTGCAC
GTGGTGCGCT ACAACCGCCG CAACCTGGAC CAGCTGATCG AGCAGATCAA CAACTCTGGC
TATGGCCTGA CCCTCGGCGT GCACACCCGC ATCGACGAGA CCATCGCCAA GGTGGTGGAA
ACCGCCAATG CCGGCAACAT GTACGTAAAC CGCAATATTG TCGGTGCGGT GGTGGGCGTG
CAGCCGTTCG GCGGTGAAGG CCTATCCGGC ACCGGCCCGA AAGCAGGCGG CCCGCTGTAC
CTGTACCGCC TGCTGTCGAC CCGCCCGGCC GACGCGATTG GCCGCCACTT CCAGCAGCAG
GACGGCGAAG GCAAGCCAGA CCGCACCCTG CACGAACAGC TGATCAAGCC GCTGCATGGT
CTGAAGGCCT GGGCCGAGAG CAACCAGCTG GCTGACCTGG CTGCGCTGTG CGACCAGTTC
GCCAGCCAGT CGCAAAGCGG TATCGCCCGC CTGCTGCCAG GCCCGACCGG CGAGCGCAAC
AGCTACACCA TCCTGCCGCG CGAGCACGTG CTGTGCCTGG CGGACAACGA AGCCGACCTG
CTGGCGCAAC TGGCTGCGGT ACTGGCCGTT GGCAGCTCGG CGGTGTGGGC TGACAGCGAA
CCGGGCAAGG CCCTGCGTGC CCGCCTGCCG CGTGAGCTGC AGGCCAAGGT CAAGCTGGTG
GCGGACTGGA ACAAGGATGA CGTGGCGTTC GACGCCGTGA TCCACCATGG CGACTCGGAC
CAGCTGCGCA GCGTGTGCCA GCAGGTGGCC AAGCGCGCCG GGGCGATCGT CGGTGTGCAC
GGGCTGTCCA GCGGGGATCA CCAGATTGCG CTGGAGCGGT TGGTGATTGA GCGGGCGGTG
AGTGTGAATA CTGCGGCGGC GGGTGGTAAC GCCAGCCTGA TGACCATTGG CTGA
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| Protein sequence | MATTTLGVKL DDPTRERLKA AAQSIDRTPH WLIKQAIFNY LEKLEGGATL TELNGHVSNL
ADDAGEVQAD HSHQCFLEFA ESILPQSVLR SAITAAYRRP EQEVVPMLLE QARLSAPLAE
ATNKLAAGIA EKLRNQKSAG GRAGIVQGLL QEFSLSSQEG VALMCLAEAL LRIPDKGTRD
ALIRDKISTG NWQPHLGNSP SLFVNAATWG LLLTGKLVST HNESGLTSSL TRIIGKSGEP
MIRKGVDMAM RLMGEQFVTG ETIAEALANA SRFEAKGFRY SYDMLGEAAL TEHDAQKYLA
SYEQAIHSIG KASHGRGIYE GPGISIKLSA LHPRYSRAQY ERVMEELYPR LLSLTLLAKQ
YDIGLNIDAE EADRLELSLD LLERLCFEPS LAGWNGIGFV IQAYQKRCPY VIDYVIDLAK
RSRHRLMIRL VKGAYWDSEI KRAQVEGLEG YPVYTRKVYT DVSYVACARK LLAVPEAIYP
QFATHNAHTL SAIYHIAGQN YYPGQYEFQC LHGMGEPLYE QVVGKIADGK LNRPCRVYAP
VGTHETLLAY LVRRLLENGA NTSFVNRIAD HSISIQELVA DPVASIERMG TQEGSIGLPH
PRIPLPRDLY GNERANSAGI DMANEHRLAS LSCAMLATAH NDWKAAPLLA CAASDSAAVP
VLNPADLRDV VGHVQEATVA DVDNAIQCAL NAAPIWQATP PAERAAILER TADLMEAEIQ
PLMGLLIREA GKTFANAIAE VREAVDFLRY YAVQARNDFS NDAHRPLGPV VCISPWNFPL
AIFTGQVAAA LAAGNPVLAK PAEQTPLIAA QAVRLLLEAG IPEGVLQLLP GRGETVGAGL
VGDERVKGVM FTGSTEVARL LQRNVAGRLD NQGRPIPLIA ETGGQNAMIV DSSALTEQVV
IDVVSSAFDS AGQRCSALRV LCLQEDSADR VIEMLKGAMA ESRLGCPDRL AVDIGPVIDA
EAKAGIEKHI QGMREKGRSV YQVAIADAAE IKRGTFVMPT LIELDSFDEL KREIFGPVLH
VVRYNRRNLD QLIEQINNSG YGLTLGVHTR IDETIAKVVE TANAGNMYVN RNIVGAVVGV
QPFGGEGLSG TGPKAGGPLY LYRLLSTRPA DAIGRHFQQQ DGEGKPDRTL HEQLIKPLHG
LKAWAESNQL ADLAALCDQF ASQSQSGIAR LLPGPTGERN SYTILPREHV LCLADNEADL
LAQLAAVLAV GSSAVWADSE PGKALRARLP RELQAKVKLV ADWNKDDVAF DAVIHHGDSD
QLRSVCQQVA KRAGAIVGVH GLSSGDHQIA LERLVIERAV SVNTAAAGGN ASLMTIG
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