| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4995 |
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| Symbol | |
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| ID | 5872810 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 5573455 |
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| End bp | 5574933 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641550133 |
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| Product | sodium/proline symporter |
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| Protein accession | YP_001671215 |
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| Protein GI | 167035984 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0591] Na+/proline symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR02121] sodium/proline symporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.7582 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCAATC CACTAACGAT CACTTTCGTG GTCTACATCG CGGCAATGGT GCTGATCGGC
TTCGCCGCCT ATCGCGCCAC CAACAACCTT TCCGATTACA TTCTGGGCGG TCGCAGCCTG
GGTAGCGTGG TTACCGCGCT GTCTGCCGGC GCATCCGACA TGAGCGGCTG GCTGCTGATG
GGCCTGCCGG GCGCCATCTA CTTCTCGGGC CTGTCCGAGG CCTGGATCGC CATCGGCCTG
ACCGTTGGTG CCTACCTGAA CTGGCTGTTC GTGGCCGGCC GTCTGCGTGT GCAGACCGAA
CACAACGGTG ACGCACTGAC CCTGCCGGAC TACTTCTCCA GCCGTTTCGA AGACCAAAGC
GGCCTGCTGC GGATCATTTC GGCGATCGTC ATCCTGGTGT TCTTCACCAT CTACTGCGCT
TCCGGCATCG TTGCCGGTGC CCGTCTGTTC GAAAGCACCT TCGGCATGTC GTACGAGACA
GCCCTGTGGG CCGGCGCCGC GGCGACCATC GCCTACACCT TCGTGGGTGG CTTCCTGGCG
GTAAGTTGGA CCGACACCGT GCAGGCTTCG CTGATGATCT TCGCGCTGAT CCTGACCCCG
GTGATCGTGC TGATCTCCAC GGGTGGCTTC GACACCACCT TCGCTGCCAT CGAGGCGGTC
AACCCGGCCA ACTTCGACAT GTTCAAGGGC GCTACCTTCA TTGGCATCAT CTCGCTGATG
GGTTGGGGCC TGGGCTATTT CGGTCAGCCG CACATCCTGG CGCGTTTCAT GGCCGCCGAT
TCGGTGAAAT CGATTGCCAA AGCCCGTCGC ATCTCCATGA CCTGGATGAT TCTGTGCCTG
GCCGGTACCT GTGCCGTGGG CTTCTTCGGT ATCGCCTACT TCTCGGCCAA CCCTGATCTG
GCGGGCCCGG TGACCGAAAA CCACGAGCGC GTGTTCATCG AGCTGGCGAA GATCCTGTTC
AGCCCATGGA TCGCCGGTGT ATTGCTGTCG GCCATTCTGG CGGCGGTGAT GAGCACCCTG
AGCTGCCAAC TGCTGGTGTG CTCCAGTGCC CTGACCGAAG ACTTCTACAA GTCGTTCCTG
CGCAAGAACG CTTCGCAGCT CGAGCTGGTG TGGGTCGGTC GTCTGATGGT GCTGGCCGTA
GCCCTGATCG CCATTGCCAT GGCTGCCAAC CCGGAAAACC GCGTGCTGGG CCTGGTGGCC
TACGCCTGGG CCGGCTTCGG CGCTGCATTC GGCCCGGTGG TGCTGATTTC GGTACTGTGG
AAAGGCATGA CCCGCAACGG CGCACTGGCC GGTATCGTGG TGGGCGCAGT GACCGTGATC
GTGTGGAAGC AGATCGATAC CTGGGGCCTG TACGAAATCA TCCCAGGCTT CCTGCTGGCG
AGCATCGCCA TCGTGCTGGT GAGCAAGATG GGCAGCCCTT CGAAGGCGAT GGTGCAGCGC
TTCGAGACTG CCGATGCGGC GTACCACGCT GACAAGTAA
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| Protein sequence | MGNPLTITFV VYIAAMVLIG FAAYRATNNL SDYILGGRSL GSVVTALSAG ASDMSGWLLM
GLPGAIYFSG LSEAWIAIGL TVGAYLNWLF VAGRLRVQTE HNGDALTLPD YFSSRFEDQS
GLLRIISAIV ILVFFTIYCA SGIVAGARLF ESTFGMSYET ALWAGAAATI AYTFVGGFLA
VSWTDTVQAS LMIFALILTP VIVLISTGGF DTTFAAIEAV NPANFDMFKG ATFIGIISLM
GWGLGYFGQP HILARFMAAD SVKSIAKARR ISMTWMILCL AGTCAVGFFG IAYFSANPDL
AGPVTENHER VFIELAKILF SPWIAGVLLS AILAAVMSTL SCQLLVCSSA LTEDFYKSFL
RKNASQLELV WVGRLMVLAV ALIAIAMAAN PENRVLGLVA YAWAGFGAAF GPVVLISVLW
KGMTRNGALA GIVVGAVTVI VWKQIDTWGL YEIIPGFLLA SIAIVLVSKM GSPSKAMVQR
FETADAAYHA DK
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