| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4984 |
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| Symbol | |
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| ID | 5872799 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 5560555 |
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| End bp | 5562363 |
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| Gene Length | 1809 bp |
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| Protein Length | 602 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641550122 |
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| Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
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| Protein accession | YP_001671204 |
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| Protein GI | 167035973 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGAAA CCCCGCGACC GGCGGAGCAC ACCTCCAGCC TGAAGATCTA CTTCCGGCTG
CTGAGCTATG TGAAACCCTA TGTCGGCATT TTCCTGCTGA GCATTGTCGG TTTCGTGATC
TTTGCCTCGA CCCAGCCGAT GCTGGCCGGC ATTCTCAAGT ATTTCGTCGA TGGCCTGAGC
AACCCCGAAG CGGTGTTGTT CCCCAACGTG CCCTACCTGC GTGACCTGCA ATTGCTGCAG
GCGGTGCCGC TGCTGATCAT CCTGATCGCC GCCTGGCAGG GCCTGGGCTC GTTCCTCGGC
AACTACTTCC TGGCCAAGGT GTCCCTGTGC CTGGTGCACG ACCTGCGTGT GGAGTTGTTC
AACAAGCTGC TGGTGCTGCC TAACCGCTAC TTCGACAACC ACAACTCCGG TCACCTGATT
TCGCGCATCA CCTTCAACGT GACCATGGTC ACCGGCGCGG CCACCGATGC CATCAAGGTG
GTGATCCGCG AAGGCCTGAC CGTGGTGTTC CTGTTTGCCT ACCTGCTGTG GATGAACTGG
CACCTGACCC TGGTGATGGT CGCCATCCTG CCGGTGATCG CGGTCATGGT CAGCATCGCC
AGCAAGAAAT TCCGCAAGCA GAGCAAGAAG ATCCAGGTGG CAATGGGCGA CGTTACCCAC
GTGGCGTCGG AAACCATCCA GGGCTACCGC GTGGTCCGCA GCTTCGGCGG CGAGGCCTAC
GAGGAGCAGC GTTTCGGCAA AGCCAGCCAG AGCAACACCG ACAAGCAACT GCGCATGACC
AAGACCGGCT CGCTGTACAC GCCGATGCTG CAACTGGTGA TCTACAGCGC CATGGCCGCG
CTGATGTTCC TGGTGCTGTT CCTGCGGGGC GAGTCCACCG CCGGTGACCT GGTAGCCTAT
ATCACTGCTG CTGGCCTGCT GCCCAAGCCG ATTCGCCAGC TGTCGGAAGT CAGCTCGACC
ATCCAGAAGG GCCTGGCAGG TGCCGAGAGC ATCTTCGAGC AGTTGGACGA AGAGCCTGAG
CTGGACACCG GTACTGTCGA GAAGGAGCGT GTGGAAGGGC GCCTGGAAGT GCGCAACCTG
AGCTTCACCT ACCCGGGTAC CGAGCGTGAA GTGCTGAGCG ACATCAGTTT TGTCGCCGAA
CCTGGGCAGA TGATCGCCCT GGTCGGCCGT TCCGGCAGTG GCAAGTCGAC CTTGGCGGCG
CTTATCCCAC GCTTCTATCA CCACGACCAG GGGCAGATTC TGCTCGATGG CGTGGAAATC
GAAAACTATC GCCTGCGCAA CCTGCGTCGC CATGTTTCGC AGGTAACCCA GCACGTCACC
CTGTTCAACG ACACCGTGGC CAACAACATC GCCTACGGTG ACTTGGCCGG TGCCCCACGC
GCAGACATCG AAGCCGCCGC AGCCGATGCC TACGCCAAGG AGTTCGTCGA CCGGCTGCCG
AAGGGCTTCG ATACCGAAGT GGGAGAGAAC GGTGTACTGC TGTCCGGTGG CCAGCGCCAG
CGCCTGGCAA TTGCACGGGC GCTGCTGAAA AACGCGCCGC TGCTGATCCT CGACGAGGCT
ACTTCTGCGT TGGATACCGA GTCCGAGCGG CATATCCAGG CTGCCCTGGA TCACGTGATG
CAAGGCCGTA CCACGCTGGT GATCGCTCAC CGCCTGTCGA CGATCGAGAA GGCCGACCAG
ATCCTGGTCA TGGACCAGGG CCGCCTGGTC GAGCGTGGCA CGCATGCCGA GCTGCTTGCG
GCCAATGGCC ATTATGCCCG CTTGCATGCC ATGGGCCTGG ATGAGCCGGC CAAGGCCGAT
ATCACCTGA
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| Protein sequence | MAETPRPAEH TSSLKIYFRL LSYVKPYVGI FLLSIVGFVI FASTQPMLAG ILKYFVDGLS
NPEAVLFPNV PYLRDLQLLQ AVPLLIILIA AWQGLGSFLG NYFLAKVSLC LVHDLRVELF
NKLLVLPNRY FDNHNSGHLI SRITFNVTMV TGAATDAIKV VIREGLTVVF LFAYLLWMNW
HLTLVMVAIL PVIAVMVSIA SKKFRKQSKK IQVAMGDVTH VASETIQGYR VVRSFGGEAY
EEQRFGKASQ SNTDKQLRMT KTGSLYTPML QLVIYSAMAA LMFLVLFLRG ESTAGDLVAY
ITAAGLLPKP IRQLSEVSST IQKGLAGAES IFEQLDEEPE LDTGTVEKER VEGRLEVRNL
SFTYPGTERE VLSDISFVAE PGQMIALVGR SGSGKSTLAA LIPRFYHHDQ GQILLDGVEI
ENYRLRNLRR HVSQVTQHVT LFNDTVANNI AYGDLAGAPR ADIEAAAADA YAKEFVDRLP
KGFDTEVGEN GVLLSGGQRQ RLAIARALLK NAPLLILDEA TSALDTESER HIQAALDHVM
QGRTTLVIAH RLSTIEKADQ ILVMDQGRLV ERGTHAELLA ANGHYARLHA MGLDEPAKAD
IT
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