Gene PputGB1_4976 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_4976 
Symbol 
ID5872791 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp5551768 
End bp5553204 
Gene Length1437 bp 
Protein Length478 aa 
Translation table11 
GC content64% 
IMG OID641550114 
ProductTolC family type I secretion outer membrane protein 
Protein accessionYP_001671196 
Protein GI167035965 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGCGCA AACTCTCACT GGCGATAGCC GTGTCTTGTG CGTCCAACGG AGTGGTCTGG 
GCAGCGGACG TGCCCCAATC AGTAAAGACC GACCTGGTCA GCGTCTATCA GGAAGCGGTC
GACAACAACG CCGACCTGGC GGCGGCACGC GCCGATTACG GCGCCCGCAA AGAGGTGGTG
CCCCAAGCCC GTGCCGGGTT GCTGCCAAAC CTGTCGGCCG GCGCAGAAAT GCTGAACACG
CGCACCAAGC TGGACGAACC ATCGACCACC AGCAACCGCA GCGGCAACAC CTGGAGCGCC
ACCCTGGCTC AGCCGATCTT CCGCGCTGAC CGCTGGTTCC AGCTGCAAGC GGCCGAAGCG
GTCAACGAAC AGGCAGCGCT GGAGCTGTCG GCGACCGAGC AGAACCTGAT CCTGCAAACC
GCGCAGAACT ACTTCGCCGT ACTTCGCGCA CAGGACAACC TGGCCGCGAC CAAGGCCGAG
GAAGCGGCCT TCAAACGCCA GCTGGACCAG TCCAACGAAC GCTTCGACGT CGGCCTTTCC
GACAAGACCG ACGTGCTGCA GTCCCAAGCC AGCTACGACA CCGCCCGGGC CAACCGGATC
ATCGCCGAAC GCCAGGTGCA AGACGCCTTC GAGGCCCTGG TGACCCTGAC CAACCGCGAA
TACACCTCGA TCCAGGGGGT GGTGCACACC CTGCCGGTGC AGGTGCCTAC ACCTAACGAC
GCCAAGGCCT GGGTAGAAAC CGCTGGTCGC CAGAACCTCA ACCTGTTGGC GACCAACTAC
GCGGTTTCCG CCGCCGAAGA AACCCTGCGC CAGCGCAAGG CCGGCCATGC GCCGACCCTT
GACGCAGTGG CCAAGTACCA GAAAGGTGAC AACGACAACT TCGGTTTCAC CAACCCCGCA
CCAGCCCCCG TCACGCGCTA CGGCGGCGAT GTCGAGCAGA CCAGCATCGG CCTGCAACTG
AACATCCCGA TCTACAGCGG CGGCCTGACC AGCTCGCAGG TGCGCGAGGC CTACCAGCGC
CTGAGCCAGA GCGAGCAGCA ACGCGAAAGC CTGCGCCGCC AGGTGGTGGA AAACACCCGC
AACCTGCACC GCGCGGTGAA CACCGATGTA GAGCAGGTAC AGGCGCGCAA GCAGTCGATC
ATCTCCAACC AGAGTGCGCT GGAAGCCACC GAAATCGGTT ACCAGGTCGG TACACGCAAC
ATCGTCGACG TGCTCGATGC CCAGCGCCAG CTGTACACCT CGGTGCGCGA CTACAACAAC
AGCCGCTATG ACTACATTCT CGACAACCTG AGCCTGAAGC AGGCAGCCGG CACCCTGAGC
CCGCAAGACC TGCAGGACCT CAAGCGTTAC CTGAAAGCGG ACTACAACCC GGACAAGGAC
TTCCTGCCAC CGGACCTGGC GGCTGCCGCG GCGAAGAACT TCGAGCGCCG CCCTTGA
 
Protein sequence
MLRKLSLAIA VSCASNGVVW AADVPQSVKT DLVSVYQEAV DNNADLAAAR ADYGARKEVV 
PQARAGLLPN LSAGAEMLNT RTKLDEPSTT SNRSGNTWSA TLAQPIFRAD RWFQLQAAEA
VNEQAALELS ATEQNLILQT AQNYFAVLRA QDNLAATKAE EAAFKRQLDQ SNERFDVGLS
DKTDVLQSQA SYDTARANRI IAERQVQDAF EALVTLTNRE YTSIQGVVHT LPVQVPTPND
AKAWVETAGR QNLNLLATNY AVSAAEETLR QRKAGHAPTL DAVAKYQKGD NDNFGFTNPA
PAPVTRYGGD VEQTSIGLQL NIPIYSGGLT SSQVREAYQR LSQSEQQRES LRRQVVENTR
NLHRAVNTDV EQVQARKQSI ISNQSALEAT EIGYQVGTRN IVDVLDAQRQ LYTSVRDYNN
SRYDYILDNL SLKQAAGTLS PQDLQDLKRY LKADYNPDKD FLPPDLAAAA AKNFERRP