| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4949 |
|---|
| Symbol | |
|---|
| ID | 5872764 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 5522512 |
|---|
| End bp | 5523942 |
|---|
| Gene Length | 1431 bp |
|---|
| Protein Length | 476 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641550087 |
|---|
| Product | N-acetylmuramoyl-L-alanine amidase |
|---|
| Protein accession | YP_001671169 |
|---|
| Protein GI | 167035938 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.0480001 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.137764 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCATAC GCGCACTGGT CGCCATCGTT GGGCTGCTGC TGACAACGGT GACCGTTGAC
GCTCTGGCCG TCACACAAGT CAAGAGCATG CGCCTGTGGC GCGCGCCAGA CAACACGCGG
CTGGTCTTCG ACCTGTCTGG CCCCGTGCAG CACAGCGTCT TCACCTTGAG CGCACCGGAT
CGTCTGGTTA TCGACATCAA TGGTGCGACC CTGGCCGCGC CATTGAACGT GGCCACCTCC
AATACGCCGA TCAGCAGCGT GCGTTCGGCA CAACGTACCC CGACCGACCT GCGCGTGGTG
GTCGACCTGA AAAAGTCGGT TACCCCAAAA AGCTTCACCT TGGCGCCCAA TGCCCAGTAC
GGCAATCGCC TGGTGGTCGA CCTGTACGAC CAGGAAGCCG ACGCCATTGC AGCCAGCGCG
CCACCTCCTA CCCCGACCCC GGTACAAACA CCTGCGACCA CGCCTGCGGT GCCGGTAAGC
CCGGCCCAGC CTGCCATCAA GCTGCCACCG GTGCCGAGCG GCAAGCGTGA AATCGTTGTG
GCCATCGATG CCGGTCACGG TGGCGAAGAC CCCGGTGCAT CCGGTTCGCG TGGCCAGCAT
GAAAAAGACA TCGTGCTGCA GATCGCCAAG GAACTGCAGC GCCAGATCAA CAGCGAACGC
GGCTTCCGGG CGGAGCTGAC CCGCACTGGC GACTACTTCA TTCCACTGCG TAAACGCACG
GAAATCGCCC GCAAGAAGGG CGCCGACCTG TTCATTTCGA TCCACGCCGA CGCCGCGCCG
TCGCGTGCGG CCTTTGGCGC CTCGGTATTT GCCCTGTCCG ACCGCGGCGC CACTTCCGAG
ACTGCGCGCT GGCTGGCCGA CACGGAAAAC CGCTCCGACC TGATCGGTGG TGCGGGTAAC
GTCAGCCTCG ACGACAAGGA CCGTATGCTC GCGGGGGTGC TGCTCGACCT CTCCATGACC
GCCACGCTCA GCTCCAGCCT CAATGTGGGG CAGAAAGTGC TGGGCAACAT GGGGCGTGTC
ACCTCGCTGC ACAAACAGCG CGTGGAACAG GCCGGCTTCA TGGTGCTGAA GTCGCCGGAT
ATTCCGTCGA TCCTGGTTGA AACCGGGTTC ATTTCGAACA ACAACGAAGC CGCCAAGCTG
GCCACTGCGA GCCACCAGCA AGCCCTGGCC CGCTCGATCC ACACCGGTGT ACGCCAGTAC
TTCCAGCAGA ACCCGCCGCC AGGCACTTAT ATCGCCTGGC TGCGCGACAC CGGCAAGATT
GCGGCTGGGC CGCGTGAGCA CACCGTCCGG CCTGGCGAAA CCCTGGCGAT GCTGGCTGTA
CGCTACCAGG TCAGCGTGGC CAGCCTGCGC AGCACCAACA GCCTCAAGAC CGATGAGCTG
AAGGTCGGCC AACGCCTTGA TGTACCCGCC ACGACCCTGG CGGCGCAATA A
|
|---|
| Protein sequence | MRIRALVAIV GLLLTTVTVD ALAVTQVKSM RLWRAPDNTR LVFDLSGPVQ HSVFTLSAPD
RLVIDINGAT LAAPLNVATS NTPISSVRSA QRTPTDLRVV VDLKKSVTPK SFTLAPNAQY
GNRLVVDLYD QEADAIAASA PPPTPTPVQT PATTPAVPVS PAQPAIKLPP VPSGKREIVV
AIDAGHGGED PGASGSRGQH EKDIVLQIAK ELQRQINSER GFRAELTRTG DYFIPLRKRT
EIARKKGADL FISIHADAAP SRAAFGASVF ALSDRGATSE TARWLADTEN RSDLIGGAGN
VSLDDKDRML AGVLLDLSMT ATLSSSLNVG QKVLGNMGRV TSLHKQRVEQ AGFMVLKSPD
IPSILVETGF ISNNNEAAKL ATASHQQALA RSIHTGVRQY FQQNPPPGTY IAWLRDTGKI
AAGPREHTVR PGETLAMLAV RYQVSVASLR STNSLKTDEL KVGQRLDVPA TTLAAQ
|
|---|
| |