Gene PputGB1_4949 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_4949 
Symbol 
ID5872764 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp5522512 
End bp5523942 
Gene Length1431 bp 
Protein Length476 aa 
Translation table11 
GC content64% 
IMG OID641550087 
ProductN-acetylmuramoyl-L-alanine amidase 
Protein accessionYP_001671169 
Protein GI167035938 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.0480001 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.137764 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCATAC GCGCACTGGT CGCCATCGTT GGGCTGCTGC TGACAACGGT GACCGTTGAC 
GCTCTGGCCG TCACACAAGT CAAGAGCATG CGCCTGTGGC GCGCGCCAGA CAACACGCGG
CTGGTCTTCG ACCTGTCTGG CCCCGTGCAG CACAGCGTCT TCACCTTGAG CGCACCGGAT
CGTCTGGTTA TCGACATCAA TGGTGCGACC CTGGCCGCGC CATTGAACGT GGCCACCTCC
AATACGCCGA TCAGCAGCGT GCGTTCGGCA CAACGTACCC CGACCGACCT GCGCGTGGTG
GTCGACCTGA AAAAGTCGGT TACCCCAAAA AGCTTCACCT TGGCGCCCAA TGCCCAGTAC
GGCAATCGCC TGGTGGTCGA CCTGTACGAC CAGGAAGCCG ACGCCATTGC AGCCAGCGCG
CCACCTCCTA CCCCGACCCC GGTACAAACA CCTGCGACCA CGCCTGCGGT GCCGGTAAGC
CCGGCCCAGC CTGCCATCAA GCTGCCACCG GTGCCGAGCG GCAAGCGTGA AATCGTTGTG
GCCATCGATG CCGGTCACGG TGGCGAAGAC CCCGGTGCAT CCGGTTCGCG TGGCCAGCAT
GAAAAAGACA TCGTGCTGCA GATCGCCAAG GAACTGCAGC GCCAGATCAA CAGCGAACGC
GGCTTCCGGG CGGAGCTGAC CCGCACTGGC GACTACTTCA TTCCACTGCG TAAACGCACG
GAAATCGCCC GCAAGAAGGG CGCCGACCTG TTCATTTCGA TCCACGCCGA CGCCGCGCCG
TCGCGTGCGG CCTTTGGCGC CTCGGTATTT GCCCTGTCCG ACCGCGGCGC CACTTCCGAG
ACTGCGCGCT GGCTGGCCGA CACGGAAAAC CGCTCCGACC TGATCGGTGG TGCGGGTAAC
GTCAGCCTCG ACGACAAGGA CCGTATGCTC GCGGGGGTGC TGCTCGACCT CTCCATGACC
GCCACGCTCA GCTCCAGCCT CAATGTGGGG CAGAAAGTGC TGGGCAACAT GGGGCGTGTC
ACCTCGCTGC ACAAACAGCG CGTGGAACAG GCCGGCTTCA TGGTGCTGAA GTCGCCGGAT
ATTCCGTCGA TCCTGGTTGA AACCGGGTTC ATTTCGAACA ACAACGAAGC CGCCAAGCTG
GCCACTGCGA GCCACCAGCA AGCCCTGGCC CGCTCGATCC ACACCGGTGT ACGCCAGTAC
TTCCAGCAGA ACCCGCCGCC AGGCACTTAT ATCGCCTGGC TGCGCGACAC CGGCAAGATT
GCGGCTGGGC CGCGTGAGCA CACCGTCCGG CCTGGCGAAA CCCTGGCGAT GCTGGCTGTA
CGCTACCAGG TCAGCGTGGC CAGCCTGCGC AGCACCAACA GCCTCAAGAC CGATGAGCTG
AAGGTCGGCC AACGCCTTGA TGTACCCGCC ACGACCCTGG CGGCGCAATA A
 
Protein sequence
MRIRALVAIV GLLLTTVTVD ALAVTQVKSM RLWRAPDNTR LVFDLSGPVQ HSVFTLSAPD 
RLVIDINGAT LAAPLNVATS NTPISSVRSA QRTPTDLRVV VDLKKSVTPK SFTLAPNAQY
GNRLVVDLYD QEADAIAASA PPPTPTPVQT PATTPAVPVS PAQPAIKLPP VPSGKREIVV
AIDAGHGGED PGASGSRGQH EKDIVLQIAK ELQRQINSER GFRAELTRTG DYFIPLRKRT
EIARKKGADL FISIHADAAP SRAAFGASVF ALSDRGATSE TARWLADTEN RSDLIGGAGN
VSLDDKDRML AGVLLDLSMT ATLSSSLNVG QKVLGNMGRV TSLHKQRVEQ AGFMVLKSPD
IPSILVETGF ISNNNEAAKL ATASHQQALA RSIHTGVRQY FQQNPPPGTY IAWLRDTGKI
AAGPREHTVR PGETLAMLAV RYQVSVASLR STNSLKTDEL KVGQRLDVPA TTLAAQ