Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_4946 |
Symbol | hfq |
ID | 5872761 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 5519286 |
End bp | 5519546 |
Gene Length | 261 bp |
Protein Length | 86 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 641550084 |
Product | RNA-binding protein Hfq |
Protein accession | YP_001671166 |
Protein GI | 167035935 |
COG category | [R] General function prediction only |
COG ID | [COG1923] Uncharacterized host factor I protein |
TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.0125907 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCAAAAG GGCATTCGCT ACAAGACCCT TACTTGAACA CCTTGAGAAA AGAAAAGGTC CCGGTATCCA TCTACCTGGT CAACGGTATC AAGCTGCAGG GTTCGATCGA ATCGTTCGAC CAGTTCGTGG TTCTGCTGAA GAACACCGTC AGCCAGATGG TCTACAAGCA CGCCATTTCG ACCGTGGTTC CGGCCCGTCC GGTCCGCCTG CCAAGCCCGA CCGATGGCGA GCACGGCGAC AGCGAGCCAG GCAACGCCTG A
|
Protein sequence | MSKGHSLQDP YLNTLRKEKV PVSIYLVNGI KLQGSIESFD QFVVLLKNTV SQMVYKHAIS TVVPARPVRL PSPTDGEHGD SEPGNA
|
| |