Gene PputGB1_4944 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_4944 
Symbol 
ID5872759 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp5516694 
End bp5517875 
Gene Length1182 bp 
Protein Length393 aa 
Translation table11 
GC content63% 
IMG OID641550082 
ProductHflK protein 
Protein accessionYP_001671164 
Protein GI167035933 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0330] Membrane protease subunits, stomatin/prohibitin homologs 
TIGRFAM ID[TIGR01933] HflK protein 


Plasmid Coverage information

Num covering plasmid clones43 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.00499727 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCTTGGA ACGAGCCGGG TGGCAACTCG AACAATCAGG ATCCCTGGGG CGGCCGCCGT 
GGTGGCGGTG GCGGTGGTGG TGACAAAAAA GGTCCGCCGG ATCTGGACGA GGCCTTCCGC
AAACTGCAGG ACAGCCTCAA CGGCATGTTC GGCGGTAGCA AAAAACGTGG CGGCGGTGAC
CGCAATGTCG GCAAGGGCGG TGGCCTGGGC CTGCTGGGCA TTGGCCTGGC GGTACTGGCG
GCCATCTGGC TGTACAGCGC CGTGTACGTG GTCGACGAGC AGGAGCAGGC CGTGGTGCTG
CGCTTCGGCA AGTACTACGA GACGGTCGGT CCCGGCCTGA ACATCTACTT CCCGCCGATC
GATCGCAAGT ACATGGAAAA CGTCACGCGC GAGCGTGCCT ATACCAAGCA GGGCCAGATG
CTGACCGAAG ACGAGAACAT CGTCGAGGTG CCGCTGACCG TCCAGTACAA GATCAGCAAC
CTTCAGGACT TCGTGCTCAA CGTCGACCAG CCTGAGGTGA GCCTGCAGCA CGCGACCGAC
AGTGCCTTGC GCCACGTGGT GGGTTCCACC TCGATGGACC AGGTGCTGAC CGAAGGCCGT
GAACAGATGG CCGTGGATAT CCGCGAACGT CTGCAGCGCT TCCTCGACAA CTACCGTACC
GGTATCACCG TTACCCAGGT CAACGTACAG AGCGCGGCAG CCCCGCGTGA AGTGCAGGAA
GCCTTCGATG ACGTGATCCG TGCCCGCGAA GACGAGCAGC GTGCCCGCAA CCAGGCCGAA
TCCTACGCCA ATGGCGTGGT GCCGGAAGCC CGTGGTCAGG CCCAGCGCAT CATCGAGGAC
GCCAACGGTT ACCGCGACGA AGTCATCGCC CGCGCCAAGG GTGAGGCCGA CCGATTCACC
AAGCTGGTTG CCGAGTACCA CAAGGCACCT GACGTGACCC GTCAGCGTCT GTACCTGGAG
ACCATGCAAG AGGTCTACAG CAATTCGAGC AAGGTCATGG TGGCGACCAA GGACGGGCAG
AACAACCTGC TCTACCTGCC ACTGGACAAG ATGGTCGAAG GCAGCCGCAA CCCGTCCACG
CCAAGCAGCA CTGTGTCGCC ATCGGTCAAC GATGCGGCCG CCCGTGCGGC GCAGGACATG
CAACAGCAAC AGCAGCCGCT GCGTACTAGG GAGAGCCGCT GA
 
Protein sequence
MAWNEPGGNS NNQDPWGGRR GGGGGGGDKK GPPDLDEAFR KLQDSLNGMF GGSKKRGGGD 
RNVGKGGGLG LLGIGLAVLA AIWLYSAVYV VDEQEQAVVL RFGKYYETVG PGLNIYFPPI
DRKYMENVTR ERAYTKQGQM LTEDENIVEV PLTVQYKISN LQDFVLNVDQ PEVSLQHATD
SALRHVVGST SMDQVLTEGR EQMAVDIRER LQRFLDNYRT GITVTQVNVQ SAAAPREVQE
AFDDVIRARE DEQRARNQAE SYANGVVPEA RGQAQRIIED ANGYRDEVIA RAKGEADRFT
KLVAEYHKAP DVTRQRLYLE TMQEVYSNSS KVMVATKDGQ NNLLYLPLDK MVEGSRNPST
PSSTVSPSVN DAAARAAQDM QQQQQPLRTR ESR