Gene PputGB1_4943 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_4943 
Symbol 
ID5872758 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp5515825 
End bp5516694 
Gene Length870 bp 
Protein Length289 aa 
Translation table11 
GC content61% 
IMG OID641550081 
ProductHflC protein 
Protein accessionYP_001671163 
Protein GI167035932 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0330] Membrane protease subunits, stomatin/prohibitin homologs 
TIGRFAM ID[TIGR01932] HflC protein 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.00429597 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCAATA GATCGCTGAT CGCCCTGATC GCCGCCGTGG TCCTGGCCAT CGTGGCCTGG 
AACAGCTTCT ACATCGTGTC CCAGACCGAA CGTGCGGTAC TGCTGCGTTT TGGTAAGGTG
GTCCAGGCGG ACGTTCAGCC TGGCCTGCAC GTGAAGATTC CGTACGTGAA CCAGGTGCGC
AAGTTCGACG CCCGCCTCAT GACCCTCGAC GCCCCGACCC AGCGGTTCCT GACCCTGGAG
AAGAAAGCCG TGATGGTCGA CGCCTACGCC AAGTGGCGCG TCAAGGATGC CGAGCGCTTC
TACACTGCCA CGTCCGGTAT GAAGCAGATC GCCGACGAGC GTCTGTCGCG TCGTCTGGAA
AGCGGCCTGC GTGACCAGTT CGGTAAACGT ACCTTGCACG AGGTGGTTTC CGGTGAACGT
GACGCACTGA TGGCTGACAT CACTGCATCG CTGAACCGCA TGGCCAACAA GGAGCTGGGT
ATCGAGGTGG TCGACGTGCG CGTCAAGGCC ATCGACCTGC CGAAGGAAGT CAACCGCAGC
GTGTTCGATC GCATGAGCAC CGAGCGTGAG CGTGAAGCCC GCGAGCACCG TGCCAAAGGT
AACGAGCTGG CTGAAGGTAT CCGTGCCGAT GCCGACCGTC AGCGCCGTGT GCTGCTGGCC
GAGGCCTATC GCGAAGCAGA AGAAACCCGC GGTGATGGTG ACGCCCAGGC GGCCGCCATC
TATGCCAAGG CCTACAGCCA GGACGCTGAT TTCTATGCGT TCCACCGTAG CCTGCAGGCA
TACCGCGAAA GCTTCTCGAG CAAGAGCGAC GTGCTGGTCC TGGACCCGAA GAACGAGTTC
TTCCGTTACC TGGACAAGAG CAAGCCGTGA
 
Protein sequence
MSNRSLIALI AAVVLAIVAW NSFYIVSQTE RAVLLRFGKV VQADVQPGLH VKIPYVNQVR 
KFDARLMTLD APTQRFLTLE KKAVMVDAYA KWRVKDAERF YTATSGMKQI ADERLSRRLE
SGLRDQFGKR TLHEVVSGER DALMADITAS LNRMANKELG IEVVDVRVKA IDLPKEVNRS
VFDRMSTERE REAREHRAKG NELAEGIRAD ADRQRRVLLA EAYREAEETR GDGDAQAAAI
YAKAYSQDAD FYAFHRSLQA YRESFSSKSD VLVLDPKNEF FRYLDKSKP