Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_4936 |
Symbol | |
ID | 5872749 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 5504370 |
End bp | 5506943 |
Gene Length | 2574 bp |
Protein Length | 857 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641550072 |
Product | ribonuclease R |
Protein accession | YP_001671156 |
Protein GI | 167035925 |
COG category | [K] Transcription |
COG ID | [COG0557] Exoribonuclease R |
TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases [TIGR02063] ribonuclease R |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0000328048 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCCGATT GGCAATCCCT CGATCCCGAG GCCGCTCGCG AAGCGGAAAA ATACGACAAC CCCATTCCCA GCCGTGAGCT GATCCTGCAG CGCCTCGCCG ACCGTGGCGA ACCCGCTGCC CGCGAGGAGC TGGCGAAAGA GTTTGGTCTG TATGAGGAAG ACCAGATCGA AGCCCTGCGC CGCCGCCTGC GTGCCATGGA GCGCGATGGC CAGCTTATCT ATACCCGGCG CGGCACTTAT GCCCCGGTGG ACAAGCTGGA CCTGATCTGC GGCCGTATCT CCGGCCACCG CGACGGTTTT GGTTTCCTCA TCCCCGATGA TGGCAGTGAT GACCTGTTCC TTGGCCCGTC GCAGATGCGT CTGGCCTTCG ATGGCGACCG CGCGTTGGCG CGGGTTTCCG GCACAGACCG CCGTGGGCGC CGTGAAGGGG TGATCGTCGA GGTCATTTCC CGCGCCCATG AGAGCGTGGT CGGTCGCTAT TTCGAAGAAG GCGGCATTGG CTACGTGACG CCGGACAACC CGAAGATCCA GCAGGAAGTG CTGGTGACCG CCGGGCGTAA CGGCGGTGCC AAGATCGGTC AGTTCGTCGA AATCAAGATC ACCCACTGGC CAACCCCGCG CTTCCAGCCG CAAGGCGATG TGGTCGAGGT CATCGGCAAC TACATGGCCC CAGGCATGGA AATCGACGTA GCCCTGCGCA GCTACGACAT CCCGCACGTC TGGCCTGCTG ATGTGGTCAA GGAAGCACGC AAGTTCCGCT CCGAAGTCGA GGAGAAGGAT AAAGAGAAGC GCGTCGACCT GCGCCATCTG CCGTTCGTCA CCATTGATGG TGAAGACGCC CGCGACTTCG ACGATGCCGT TTATTGCGAG CCCCTGGGCA AGCTGCGCCT GTTCTCCGGT GGCTGGCGTC TGTACGTGGC CATTGCCGAC GTTTCCAGCT ACGTGCGCCT GGGCTCGGCC CTGGATGTCG AAGCCCAGCA GCGCGGCAAC TCGGTGTACT TCCCCGAGCG TGTGGTGCCG ATGCTCCCCG AAGAGCTGTC CAACGGCCTG TGCTCGCTGA ACCCGCATGT CGACCGGTTG GCCATGGTTT GTGAAATGAC CATGAACAAA GCCGGCCAGA TGGTCGACTA TCAGTTCTAC GAAGGCGTGA TCCACTCTCA CGCCCGCCTG ACCTACAACA AGGTCAGCAG CATGCTCGAG CACGCCCGTA CCCGTGAGGG TAAAGCGCTG CGCGAAGAGT ACAAGGAAGT CGTGCCGGAC CTGAAGAACC TGTACAACCT GTACAAGGTG CTGGTGGATG CGCGTCACAC GCGTGGTGCC ATCGACTTCG AAACCCAGGA AACCCGCATC ATCTTCGGTG ACCAGCGCAA GATCGCGGAA ATTCGCCCGA CCGTACGCAA TGATGCCCAC AAGCTGATCG AGGAATGCAT GCTGGCGGCC AACGTGGCCA CCGCCGAGTT CCTGCAGAAG CATGGCGTGC CAGCCCTGTA CCGCGTGCAC GACGGCCCGC CGCCGGAGCG CCTGGAAAAG CTGCGCGCCT TCCTGGGTGA GCTGGGCCTG AGCCTGCACA AGGGCAAGGA CCCGTCGCCG AAGGACTACC AGGCTCTGCT GGCGAGCATC GCCGGGCGCC CGGACTTCCA CCTGATTCAG ACCGTCATGC TGCGCTCGCT GAGCCAGGCG GTGTACAGCA CCGAGAACAA CGGCCACTTT GGCTTGAACT ACGAGGCGTA CACCCACTTT ACCTCGCCGA TCCGCCGTTA CCCGGACCTG CTGGTGCACC GCGCCATCCG CAGCATCATC CGTTCCAAGG TAGATACCCC GCACGTCAAG CGTGCCGGTG CCATGAGCAT CCCCAAGGCG CGTATCTACC CGTACGACGA AAACACCCTG GAGCAACTCG GCGAACAGTG CTCGATGACC GAGCGCCGGG CCGACGAGGC CACCCGTGAC GTGGTCAACT GGCTCAAGTG CGAGTTCATG AAGGACCGTG TGGGCGAGAC GTTCCCGGGT GTGATCACTG CGGTGACCGG TTTTGGCCTG TTCGTCGAGC TGACCGATAT CTATGTGGAA GGCCTGGTGC ACGTCAGTGC GCTGCCGGGC GACTATTACC ACTTCGACCC GGTGCATCAC CGCCTGTCCG GCGAGCGCAC AGGGCGCAGC TTCCGCCTGG GCGACACCAT CGAAGTCAAG GTCATGCGCG TCGATCTGGA CGAGCGCAAG ATCGACTTCG AAGTGTCGGA CAAGACCCTC GCCGCACCGA TCGGCCGCAA GCAGCGCGGC GCCGCACAGG CTACCGAAAA GGCCGAGCAG CCGCCGGTTG CCGAAGCGAA AGCCACGCCC AAGCCGCGCA GCCGCAAAAG CGAAGCGTCC GAAGCGTATT TCCCCAAGGA TGCCGTGCAG CGCAATGCTG AAGTGCGTAA AAGCCGCGAG ATGAAAAAAG CCCTGATGAC CGACGCGCGC AGCAGTGCTG GCAGCAAGTC GGAAAAAGGT GGCAAGCCGT CCGGCAAACC GACCAAGCAC CGTAAAGGCC CGCCGAAGTC CGGCGCGCCA CGCAAGAGCA AGAGCAAGTC ATGA
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Protein sequence | MADWQSLDPE AAREAEKYDN PIPSRELILQ RLADRGEPAA REELAKEFGL YEEDQIEALR RRLRAMERDG QLIYTRRGTY APVDKLDLIC GRISGHRDGF GFLIPDDGSD DLFLGPSQMR LAFDGDRALA RVSGTDRRGR REGVIVEVIS RAHESVVGRY FEEGGIGYVT PDNPKIQQEV LVTAGRNGGA KIGQFVEIKI THWPTPRFQP QGDVVEVIGN YMAPGMEIDV ALRSYDIPHV WPADVVKEAR KFRSEVEEKD KEKRVDLRHL PFVTIDGEDA RDFDDAVYCE PLGKLRLFSG GWRLYVAIAD VSSYVRLGSA LDVEAQQRGN SVYFPERVVP MLPEELSNGL CSLNPHVDRL AMVCEMTMNK AGQMVDYQFY EGVIHSHARL TYNKVSSMLE HARTREGKAL REEYKEVVPD LKNLYNLYKV LVDARHTRGA IDFETQETRI IFGDQRKIAE IRPTVRNDAH KLIEECMLAA NVATAEFLQK HGVPALYRVH DGPPPERLEK LRAFLGELGL SLHKGKDPSP KDYQALLASI AGRPDFHLIQ TVMLRSLSQA VYSTENNGHF GLNYEAYTHF TSPIRRYPDL LVHRAIRSII RSKVDTPHVK RAGAMSIPKA RIYPYDENTL EQLGEQCSMT ERRADEATRD VVNWLKCEFM KDRVGETFPG VITAVTGFGL FVELTDIYVE GLVHVSALPG DYYHFDPVHH RLSGERTGRS FRLGDTIEVK VMRVDLDERK IDFEVSDKTL AAPIGRKQRG AAQATEKAEQ PPVAEAKATP KPRSRKSEAS EAYFPKDAVQ RNAEVRKSRE MKKALMTDAR SSAGSKSEKG GKPSGKPTKH RKGPPKSGAP RKSKSKS
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