Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_4920 |
Symbol | |
ID | 5872733 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 5487610 |
End bp | 5488485 |
Gene Length | 876 bp |
Protein Length | 291 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641550056 |
Product | ABC transporter related |
Protein accession | YP_001671140 |
Protein GI | 167035909 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0411] ABC-type branched-chain amino acid transport systems, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00000108293 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000000000000110275 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAGCGACG ATATCATTCT CTCGGTCGAC AACCTGATGA TGCAGTTCGG TGGCATCAAG GCGCTCAGCG ACGTCAGCCT CAAGGTCCGG CGCAATCAGA TCTTTGCCTT GATCGGCCCC AACGGCGCCG GCAAGACCAC GGTATTCAAC TGCCTGACCG GCTTCTACAA GGCCAGTGGC GGGCGTATCG AGCTGAACGT GCGCGGCAGT CACACCAACG TCATCCAGCT GCTTGGCGAA CGCTTCCAGG CGGCCGATTT CGTGTCGCCT GCGCGCTTTG CCAACCGCAT GTACTACAAG ATGTTCGGCG GCACCCACCT GGTCAACCGC GCGGGCCTGG CGCGCACCTT CCAGAACATT CGCCTGTTCA AGGAAATGTC GGTGGTGGAG AACCTGCTGG TGGCCCAGCA CATGTGGGTC AATCGCAACC TGCTGGCCGG GGTGCTCAAC ACCAAGGCCT ACCGCAAGGC CGAAAGCGAT GCGTTGGACC ACGCGTTCTA CTGGCTTGAA GTGGTCGACC TGGTCGACTG CGCCAACCGC CTGGCCGGCG AGTTGTCGTA CGGCCAGCAG CGGCGCCTGG AAATTGCCCG AGCCATGTGC ACACGGCCGA AAATCATCTG CCTGGATGAA CCGGCGGCGG GCCTGAACCC CCAGGAAACC GAAGCCCTCA GCCGCATGAT CCGCGTACTG CGTGACGAGC ACGACATCAC CGTGGTGCTG ATCGAGCATG ACATGGGCAT GGTCATGAGC ATTTCCGACC ATATCGTGGT GCTGGACCAT GGCAACGTGA TTGCCGAAGG CGCGCCGCAG GACATCCGCC ACAACCCGAC GGTGATCGCC GCCTACCTGG GTGCAGACGA AGAGGAACTG GTATGA
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Protein sequence | MSDDIILSVD NLMMQFGGIK ALSDVSLKVR RNQIFALIGP NGAGKTTVFN CLTGFYKASG GRIELNVRGS HTNVIQLLGE RFQAADFVSP ARFANRMYYK MFGGTHLVNR AGLARTFQNI RLFKEMSVVE NLLVAQHMWV NRNLLAGVLN TKAYRKAESD ALDHAFYWLE VVDLVDCANR LAGELSYGQQ RRLEIARAMC TRPKIICLDE PAAGLNPQET EALSRMIRVL RDEHDITVVL IEHDMGMVMS ISDHIVVLDH GNVIAEGAPQ DIRHNPTVIA AYLGADEEEL V
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