Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_4896 |
Symbol | |
ID | 5872709 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 5463230 |
End bp | 5464651 |
Gene Length | 1422 bp |
Protein Length | 473 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641550032 |
Product | D-alanine/D-serine/glycine permease |
Protein accession | YP_001671116 |
Protein GI | 167035885 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.673653 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.259186 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCAAA CCTCACCCTC AACGCCAGAT GAACAGCATC TGCAGCGCAA CCTGACCAAC CGCCACATCC AGCTGATCGC CATCGGCGGC GCGATCGGTA CCGGCCTGTT CATGGGCTCG GGCAAAACCA TCAGCCTGGC CGGGCCGTCG ATCATCTTCG TCTACATGAT CATCGGCTTC ATGCTGTTCT TCGTCATGCG CGCCATGGGC GAACTGCTGC TGTCGAACCT GAACTACAAG TCGTTCATCG ACTTCTCCGC CGACCTGCTC GGCCCCTGGG CCGGCTATTT CACCGGCTGG ACCTACTGGT TCTGCTGGGT GGTCACCGGC ATCGCCGACG TGGTCGCCAT CGCCGCCTAC ACACAGTTCT GGTTTCCCGA CTTGCCACAG TGGATACCGG CGCTGACCTG CGTCGGGCTG CTGCTGTCGC TGAACCTGGT GACGGTGAAA ATGTTCGGCG AGCTGGAATT CTGGTTCGCC CTGGTCAAGA TCGTCGCCAT CCTTGGCCTG GTCGCGACTG GCCTGTACAT GGTGATCACC GGCTTCACCT CGCCCAGCGG GCGCACCGCA CAGCTGGCCA ACCTGTGGAA TGACAGCGGC ATGTTCCCCC ATGGCCTGAT GGGCTTCTTC GCCGGTTTCC AGATCGCGGT GTTCGCCTTC GTCGGCATCG AGCTGGTGGG TACCACCGCC GCCGAAGCGA AGAACCCGGA GCGCACCCTG CCGCGGGCGA TCAACTCGAT CCCGATCCGC ATCATCGTGT TCTATGTGCT GGCGCTGATC GCGATCATGG CCGTGACCCC ATGGCGCGAC GTGGTGCCAG GCAAGAGCCC GTTCGTCGAA CTGTTCGTGC TGGCGGGCCT GCCGGCAGCG GCGAGCATCA TCAACTTCGT GGTACTGACC TCGGCGGCCT CGTCGGCCAA CAGCGGCGTG TTCTCCACCA GCCGCATGCT CTACGGCCTG AGCCAGGAGG GTGATGCGCC CAAGGCCTTC GAGAAGCTGT CGAGCCGCTC GGTACCGGCC AACGGCCTGT ACTTCTCCTG CACCTGCCTG CTGCTGGGCG CGGTACTGAT CTACCTGGTA CCGGACGTGG TCGAGGCGTT CACCCTGGTG ACCACGGTGT CGGCGGTGCT GTTCATGTTC GTCTGGACGC TGATCCTGCT GTCGTACCTG AAGTACCGCA AAAACCGCGC AGCGCTGCAC CAGGCGTCGA AGTACAAGAT GCCCGGCGGG CGCTTCATGT GCTACGTGTG CCTGGTGTTC TTCGCCGGCA TCCTGGTGCT GCTGAGCCTG GAGGCCGACA CCCGCTCGGC GCTGGTAGTG ACGCCGATCT GGTTCATGAT TCTGGCGGTG ACGTATCAGT TCGTGCGCAG CAGACGCCAT CCACGCGGCG CTACGCCACA GGTGGAGCAG AGCCAGCGCT AA
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Protein sequence | MTQTSPSTPD EQHLQRNLTN RHIQLIAIGG AIGTGLFMGS GKTISLAGPS IIFVYMIIGF MLFFVMRAMG ELLLSNLNYK SFIDFSADLL GPWAGYFTGW TYWFCWVVTG IADVVAIAAY TQFWFPDLPQ WIPALTCVGL LLSLNLVTVK MFGELEFWFA LVKIVAILGL VATGLYMVIT GFTSPSGRTA QLANLWNDSG MFPHGLMGFF AGFQIAVFAF VGIELVGTTA AEAKNPERTL PRAINSIPIR IIVFYVLALI AIMAVTPWRD VVPGKSPFVE LFVLAGLPAA ASIINFVVLT SAASSANSGV FSTSRMLYGL SQEGDAPKAF EKLSSRSVPA NGLYFSCTCL LLGAVLIYLV PDVVEAFTLV TTVSAVLFMF VWTLILLSYL KYRKNRAALH QASKYKMPGG RFMCYVCLVF FAGILVLLSL EADTRSALVV TPIWFMILAV TYQFVRSRRH PRGATPQVEQ SQR
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