| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4860 |
|---|
| Symbol | |
|---|
| ID | 5872673 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 5426602 |
|---|
| End bp | 5428491 |
|---|
| Gene Length | 1890 bp |
|---|
| Protein Length | 629 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641549996 |
|---|
| Product | penicillin-binding protein 2 |
|---|
| Protein accession | YP_001671080 |
|---|
| Protein GI | 167035849 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0768] Cell division protein FtsI/penicillin-binding protein 2 |
|---|
| TIGRFAM ID | [TIGR03423] penicillin-binding protein 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.493297 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCAGC CGATCCGTCT CAAGGACCAC GAGAAAGACG CCCGCCTGGT GCGCAACCGC
GTCGTGGTCG GCGCGGTGGC GATCATGCTG CTTATTTGCG TGCTGATTGC GCGGCTGTAC
TACCTGCAGA TCATCCAGTA CGACTACCAC TCCACGCTGT CGGAAAACAA TCGGGTGCAC
GTGCAGCCGA TCCCGCCGAC CCGCGGGCTG ATCTTCGACC GCAATGGGGT GATCGTCGCC
GATAACCGGC CCAGCTTCAG CCTGTCGATG ACCCGCGAAC GCGCGGGTAA CTGGCAGGAA
GTGCTGGATA CCATCGTTGA AGTGCTGGAG CTGACCGACG ACGACCGCGC CCTGTTCGAG
AAGCGCATGC GCCAGGGCCG CCGGCCGTTC GAGCCGGTGC CGATTCTGTT CGAGCTCAAC
GAAGAGCAGA TCGCCCGGGT GGCGGTAAAC CAGTTCCGCC TGCCGGGCGT GGAAGTGGTG
GCCCAGTTGG TGCGGCATTA CCCGCAGGGC GCGCATTTCG CCCATTCGGT GGGGTATGTA
GGGCGGATTA ACGAGAAAGA GCTGAAAACG CTCGACCCGG TGAACTACAG CGGCACCCAC
CATATCGGCA AGACGGGCAT CGAGCGTTTC TACGAAGATG CCCTGCACGG CCAGGTGGGT
TACGAGGAAG TCGAGACCAA CGCCCGTGGC CGTGTGCTGC GGGTGCTCAA GCGTACCGAC
CCTAAACCGG GCAAGGACAT TGTGCTGAGC CTGGACATCA AGCTGCAGGA GGCTGCCGAG
GCTGCCCTGG GTGGCCGACG CGGCGCGGTG GTGGCGCTCG ACCCTCGGAC CGGCGAGGTG
CTGGCGATGG TCAGCCAGCC AAGCTTCGAC CCCAACCTGT TCGTTACCGG CATCAGCTTC
AAGGCCTATG CCGAACTGCG CGACTCGATA GACCGGCCGC TGTTCAACCG CGTGCTGCGC
GGCCTGTACC CACCGGGTTC GACCATCAAG CCGGCGGTGG CCATTGCTGG CCTGGACAGT
GGTGTGGTCA ATGCGGGCAG CCGGGTGTTC GACCCGGGCT ACTACCAGTT GCCCAACTAC
GATCACAAAT ACCGTAACTG GAACCGTTCC GGTGATGGCT GGGTCGACCT GGACACCGCC
ATCATGCGGT CCAACGACAC CTACTTCTAC GACCTTGCGC ACAAGATGGG CATCGATCGG
CTGTCCAGCT ACATGAACAA GTTCGGCATC GGCCAGCGGG TTTCCCTCGA CATGTTCGAG
GAGTCCGCCG GGTTGATGCC TTCGCGCGAA TGGAAGCGTG CTACCCGTCG CCAGGCCTGG
TTCCCCGGCG AAACCCTGAT TCTCGGCATC GGCCAGGGCT ACATGCAGGC CACGCCGCTG
CAACTGGCCC AGGCCACTGC ATTGATCGCC AACAAAGGCG TGTGGAACCG CCCGCACCTG
GCCAAGACCA TCGAAGGCCA GGCACCGGTG GACGACAACC CGATGGAAGA CATCGTGCTG
CGTGACAAGT CCGACTGGGC CAAGGTCACC CATGGCATGG AGCAGGTGAT GCACAACGCC
CGTGGTACCG CGCGCAAGGC CGCCGCCGGT GCTCAGTACC GCATTGCCGG CAAGAGCGGT
ACCGCCCAGG TGGTGGCGAT CAAGCAGGGC GAAAAGTACG ACCGCAACAA GCTCCAGGAG
CGCCACCGCG ACCACGCGCT GTTCGTCGCC TTTGCCCCGG CCGAGGCCCC GAAAATCGTG
GTGTCGGTAA TGGTCGAGAA CGGTGAGTCC GGCTCTGGCG TCGCCGCGCC GGTGGTACGC
CAGATCATGG ACGCCTGGCT GCTCGATGAA AATGGCCGGC TCAAGCCCGA GTTCGCGCCT
GCCACCGTTA CCCAGGAATC GCCTCTGTGA
|
|---|
| Protein sequence | MSQPIRLKDH EKDARLVRNR VVVGAVAIML LICVLIARLY YLQIIQYDYH STLSENNRVH
VQPIPPTRGL IFDRNGVIVA DNRPSFSLSM TRERAGNWQE VLDTIVEVLE LTDDDRALFE
KRMRQGRRPF EPVPILFELN EEQIARVAVN QFRLPGVEVV AQLVRHYPQG AHFAHSVGYV
GRINEKELKT LDPVNYSGTH HIGKTGIERF YEDALHGQVG YEEVETNARG RVLRVLKRTD
PKPGKDIVLS LDIKLQEAAE AALGGRRGAV VALDPRTGEV LAMVSQPSFD PNLFVTGISF
KAYAELRDSI DRPLFNRVLR GLYPPGSTIK PAVAIAGLDS GVVNAGSRVF DPGYYQLPNY
DHKYRNWNRS GDGWVDLDTA IMRSNDTYFY DLAHKMGIDR LSSYMNKFGI GQRVSLDMFE
ESAGLMPSRE WKRATRRQAW FPGETLILGI GQGYMQATPL QLAQATALIA NKGVWNRPHL
AKTIEGQAPV DDNPMEDIVL RDKSDWAKVT HGMEQVMHNA RGTARKAAAG AQYRIAGKSG
TAQVVAIKQG EKYDRNKLQE RHRDHALFVA FAPAEAPKIV VSVMVENGES GSGVAAPVVR
QIMDAWLLDE NGRLKPEFAP ATVTQESPL
|
|---|
| |