| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4820 |
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| Symbol | |
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| ID | 5872634 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 5387471 |
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| End bp | 5389177 |
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| Gene Length | 1707 bp |
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| Protein Length | 568 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641549958 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001671042 |
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| Protein GI | 167035811 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2202] FOG: PAS/PAC domain
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.179735 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGCAA GATACCGTGC AGCGGTGGAT GCGGCAGCTA TTTTCTCGGA AACCGATAAA
TCCGGAATAA TCACCTATGT CAATGAACAG TTCTGTGATA TTTCTGGCTA TAGCGCACAG
GAGTTGATTG GGCAAAACCA CCGCATACTA AACTCAGGGC AGCATCCCCC TGAGTTCTTT
ATTGATATGT GGAAAAAAGT TTCACGTGGG CAGGTATGGA AAGGTGAAAT TTGCAACCGT
AAAAAGGATG GCAGCCTGTA TTGGGTAGAG AGCACCATTG TACCCATGTA CGATGATGCC
AGCCAGCGGG TGCAGAAATA CGTTTCCATT CGTTTCGATG TGACCGAAAA GCGGAAGTTG
CTGGAAACCT TGCAATGGCA GGCTGAGCAC GACGAGCTGA CGGGTCTTCC AAATCGTTTT
TTGCTGTCCA AAGCGCTTGA TCAGGCTATT GTCAAAGCAA AGAGCCAGTC CAGCACGGTT
GCCGTGGGCG TGCTTGATCT CGATGGGTTT AAGCAGATTA ACGACCGCTA TGGCCACGAG
ATAGGTGATC GTCTGTTAGT GGCGGTGGCT GATCGCCTGA AACATAGTAT GCGTATCGAA
GATACCGTAG CCCGTTTGGG AGGCGATGAG TTCGTGCTGA TTTCGGGTGT GCGGGATCCC
AAGGTGTTGG AAAGCGCCCT GCAGAGGCTT TTAGCTGCCC TTTCCGCCGT CTACGTCATC
GATGGCATAG GCATTAATAT TTCCGCCAGT ATCGGTGTGA CGCTCTATCC AAACGATAAT
GAGAATGCCG ATACACTGCT GCGTCATGCC GATCAGGCTA TGTATAAGGC CAAACAAAGT
GGCCGTAACT GTTTCTATTT GTTTGATGTA TCAAAAGATA AGCTGATTAA ATCAGCTTTT
GATTCCGTAA TACGGGTTCG CCAAGCGTTA CATGATGGTG AGTTATGCTT GCATTATCAA
CCAAAAATAA GTTTGAGCAG TGGGGCAGTG ATTGGTTTTG AAGCACTATT GCGTTGGCAG
CATCCGCGAG ATGGACTTAT ATTACCGCAG TATTTTATAC CGTTGATTGA GCAGAGCGAT
CTGATCGTGG AGATCGGCGA GTGGGTCATA GATCAGGCGC TCAGTCAAAT AGAACAATGG
GCGGACTTGG GTCATTCGTG GTCTGTGAGT GTAAACATTG CAGCATTACA TTTGAAAAAA
GAAAACTTTG TAAAGTCCCT AAAGTTTTTG CTGGACAGCC ACCCTAATGT TTTGCCGCAG
ATGTTGGATA TTGAGATTAC CGAATCAGTG GTGATAGAAC ACTTATCACA TGTCACTCAG
TGCCTCATTG CTTGCCAGGA TCTGGGTGTG ACATTTTCGT TGGACGACTT TGGAACCGGG
TATTCATCGC TGAGCTACCT TAAACAACTG CCCACGCAGT CAATCAAGAT AGACAAATCT
TTTATACGCG ACATACTCAT CGATAAAGAC AGCTTGGGGC TGACTAAGGC GATCATCGGC
CTAGCGAAAT CGTTTAACCG CGAGGTTATT GCTGAAGGGG TGGAAACGGT TGAGCACGGA
GTGTTGCTGA TGAACCTAGG TTGTGATGTA GCGCAAGGCT ATGGTATTGC GAAACCCATG
CCGGTAGAAC AAGTGCCATC TTGGGTGGCG AAGTTTGTCC CTGCTCATTT ATCTAGAGGG
GTAATAGATA AACCGCACCG TCCATGA
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| Protein sequence | MSARYRAAVD AAAIFSETDK SGIITYVNEQ FCDISGYSAQ ELIGQNHRIL NSGQHPPEFF
IDMWKKVSRG QVWKGEICNR KKDGSLYWVE STIVPMYDDA SQRVQKYVSI RFDVTEKRKL
LETLQWQAEH DELTGLPNRF LLSKALDQAI VKAKSQSSTV AVGVLDLDGF KQINDRYGHE
IGDRLLVAVA DRLKHSMRIE DTVARLGGDE FVLISGVRDP KVLESALQRL LAALSAVYVI
DGIGINISAS IGVTLYPNDN ENADTLLRHA DQAMYKAKQS GRNCFYLFDV SKDKLIKSAF
DSVIRVRQAL HDGELCLHYQ PKISLSSGAV IGFEALLRWQ HPRDGLILPQ YFIPLIEQSD
LIVEIGEWVI DQALSQIEQW ADLGHSWSVS VNIAALHLKK ENFVKSLKFL LDSHPNVLPQ
MLDIEITESV VIEHLSHVTQ CLIACQDLGV TFSLDDFGTG YSSLSYLKQL PTQSIKIDKS
FIRDILIDKD SLGLTKAIIG LAKSFNREVI AEGVETVEHG VLLMNLGCDV AQGYGIAKPM
PVEQVPSWVA KFVPAHLSRG VIDKPHRP
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