| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4671 |
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| Symbol | |
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| ID | 5872479 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 5209237 |
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| End bp | 5212911 |
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| Gene Length | 3675 bp |
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| Protein Length | 1224 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641549804 |
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| Product | exodeoxyribonuclease V, beta subunit |
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| Protein accession | YP_001670893 |
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| Protein GI | 167035662 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.000828259 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCCAGG ACCGTCCCCT GGCACTGAGT TTCCCCCTGC ACGGCAGCCA GCTGATCGAG
GCCAGCGCCG GCACGGGCAA GACCTTCACC ATTTCGGCGC TGTACCTGCG CCTGATCCTT
GGCCACGGTG GCGAACAAGG CTTCGACCGC GAGTTGCTGC CACCGCAGAT ACTCGTGGTG
ACCTTCACCG ACGCTGCCAC CAAAGAGCTG CGCGAACGTA TCCGCGCCCG CCTGGCTGAG
GCTGCACGGT TCTTCCGTGG CGAACTGGAA GGCGCCGACC CGCTGTTGCA CCAATTGCGT
GATGATTACC CGCAAGAAGC CTGGCCGCGT TGTGCCGGCC GCTTGGAAAT CGCCGTGCAG
TGGATGGACG AAGCTGCGGT ATCGACCATC CATGGCTGGT GTCAGCGCAT GCTGCGCGAG
CATGCCTTCG ACAGCGGCAG CCTGTTCACC CAGACCCTGG AAACCGACCA CAGCGAGTTG
CTGGGCCAGG TCATGCGCGA TTACTGGCGG CGTTTTTGCT ATGGCATGCA AGGCGATGCA
CTGGCCTGGG TGCGCGGCAA CTGGGGTAGC CCCGACGCTT TGCTGCCGCG CATTCGCCCA
CTGTTTGGCC GCGTGCGTGC TCAGCAGGAT GGACCAGAGC CGGCAGCATT GATCCAGGCA
TCGCTGCAGC AACGTGGCGA GCAGCTGGCC CGGCTCAAGG CGCCATGGGC GCAGTGGGCC
GAGCAACTGC GGCAAATCTG CCGCGATGCG CTGGCCGCCA AGCAGGTCGA CGGCCGCAAG
ATGCAGGCCC GTTACTTCGA GCCCTGGTTC GACAAGCTCT GTGCCTGGGC GGGTGATGAA
CAGCTGGTTG ACCTCGACTT GGGCACGGGT TTTACCCGCC TGACCCCGGC GGGCATGGCC
GAGGCCTGGA AGGGTGAACC GCCTGAGCAC CCCGGCCTCA ACGCCATGCA GAGCTTGCAG
CAACAATTGC AGGCCTTGGA CAGCCCGGAT GCGCCCTTGC TTGAGCATGC TGCCAGCTGG
GTATCGGCAC GTTTCGAAGT AGAGAAGCGC CGGCGCGCGG AAATGGGCTT CGACGACATG
CTCGTGCGCC TGCAGCACGC CTTGGCCAGC GAGGCCGGCG AGCGCTTGGC CGGTTTGATC
CGCGAGCAGT TCCCGGTAGC GCTGATCGAC GAATTCCAGG ATACCGACCC GGTTCAGTAC
GGCATTTTCG AGCGCATCTA TCAGATCAGC GAAAACCGCG CAGACACTGG CCTGTTCATG
ATCGGAGACC CCAAGCAGGC GATCTACGCC TTCCGTGGTG CCGACATCTA CACCTACCTC
GCTGCACGGC GCGCCACCCG CGACCGCCTG CACAGCCTGG ACACCAACTA CCGGTCCAGC
AAGGCCATGG TCGCAGCGGT CAACCAGGTG TTCCTGCAGG CCGAAGTGCG TGAAACGGGG
CGGGGAGCAT TCCTGTTCCG CGCGGCGGAT GACAACCCGT TGCCGTTCAT CGAGGTGCGC
GCCAAGGGCC GTGGCGAACA GCTGCTGATT GACGGCGAAA CCAGTGCAGC CCTGCAGTGC
TGGCAACTGG AAAGCGAAGA GGCGGTTTCC AGCAGTGTCT ACCGCCAGCA GCTGGCAGCC
AGCTGCGCCA GCCATATCGT CGCGCTGCTC AATGGTGGCC AGCAAGGCAC GGCAGGCTTC
CAGAATGCCG AAGGCGAGTT GCGTCCCTGC CTGCCCTCGG ACATCGCCAT CCTGGTGCGT
GATGGCCACG AAGCGCAGGT GGTCCGCGCC GAGCTGGCCG CGCGCGATGT ACGCAGTGTG
TACCTGTCCG ACAAGGACTC GGTGTTCGCC GCCCAGGAAG CCCACGACCT GCTGGCCTGG
CTCAAGGCCT GCGCCGAGCC CGACTCGGAG CGCCTGCTCA AGGCCGCACT GGCCAGCCTT
ACACTGGGCC TGTCATTGGC CGCGCTGGAC CAGCTGAACC AGGACGAGCG GGTCTGGGAA
GGCTGGGTCA TGCGTTTTCG CCATTATCGC GATACCTGGC AACGCCAGGG CGTGTTGCCC
ATGCTGCGGC ACCTGCTGCA TGACTTCCAG CTGCCGCGCA CGCTGATCCG CCGCAGCGAT
GGCGAGCGGG TACTGACCAA CCTGCTGCAC CTGGCCGAAT TGCTGCAGCA GGCTGCTGGT
GAGCTGGACG GCGAACAGGC ATTGATCCGC CACCTGGCCG AGCACCTCGC CAATTCCGGG
CAGGCCGGTG AAGAGCAGAT CCTGCGCCTG GAAAGCGACG AACAGTTGGT CAAAGTCGTG
ACCATCCACA AGTCCAAGGG CCTGGAGTAT CCCTTGGTTT ACCTGCCGTT CATCTGCACC
AGCAAGCCGG TGGACGGCAG CCGCCTGCCG CTGGCCTGGC ATGACAGCGA AGGTAACGCC
CACCTCACCC TCACCCCGGA TCAGGAACAG ATCGAGCGCG CTGACGACGA GCGCCTGGCC
GAAGACCTGC GCCTGCTCTA TGTGGCCCTG ACCCGCGCCC AGCATGCGTG CTGGTTGGGG
GTCGCCGACC TCAAGCGTGG CAACCAGAAG AGTTCGCAGC TGCACCGATC GGCATTGGGT
TACCTGCTGG GTGGCGGCCT TGCCCTGACA GGCTCGCAGC AGCTGACGGA CTGGTTGCAG
GCGTTGGCGT CTACATGCCC GCACATTACC TGCCCGGGCC TGCCGCAGGC CAATGAGCAG
GCGTATCGCG TGCCGCACGC CGAGCGTGAG CTGCTGCCCG CACGCAAGCC CCGCCGCGCG
GCCGCCGAGC ACTGGTGGAT CGCTTCTTAC AGCGCCCTGC GCGTAGGCGA CCAGACCCTC
GGTGCCGACA GCTCACAGGC CCAGCAACTG CTGGATGACG AGGCGGTCGA TGCCCAGGTG
TTGCGCGAGG TCCCGGCTGA CAGCGGCGAT ATCCACCGTT TCCCGCGGGG GCCAAACCCA
GGCACCTTCT TGCATGGCTT GCTGGAATGG GCGGGTCGTG AAGGCTTTAG CCAGGTCAGC
GGCAACCCAC AGCTGATTGA GCGCACCGTT GGCCAGCGCT GCAACCGTCG CGACTGGACC
GGCTGGATCC CCACCCTGAG CCAGTGGATG CAACGCTTGC TGGGCGAGGC GTTACCGCTG
CCAGGCAGCG ACCAGAGCGT AATGCTGGGC CAGTTGCATC ATTACCAGAT CGAAATGGAG
TTCTGGTTCG CCAGCCACCA GGTCGATGCT GAACAACTCG ACCGCCTTGT CGCACGCCAC
ACCCACCCCG GCCTGGCGCG CCCGGCGGCG CAGCCGACCG TGCTCAACGG CATGTTCAAA
GGGTTCATCG ACCTGGCCTT CGAGCTGGAC GGGCGTTACT ACGTCACCGA CTACAAGTCC
AACTGGCTGG GCCCGGACAT CCAGGCCTAC GACACCCAAA CCATGGAAAA GGCCATTATC
GAGCACCGCT ACGACCTGCA GTACGTGCTG TACCTGCTGG CCCTGCACCG GCAGTTGCGT
GCCCGCCTGC CGGACTACGA TTACGACCGC CATGTTGGCG GTGCCCTGTT CATCTTCCTG
CGTGGTGCCA GCAGCAGCGG CCATGGCGTG TATCACGCCA AGCCACCGCG TGAGCTGATC
GAAAGCCTCG ATGCGCTGTT TCGTGGCGAG CACCCACCCG TACAGCAGGA CCTGTTTGCC
GGAGCCGTGA AATGA
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| Protein sequence | MTQDRPLALS FPLHGSQLIE ASAGTGKTFT ISALYLRLIL GHGGEQGFDR ELLPPQILVV
TFTDAATKEL RERIRARLAE AARFFRGELE GADPLLHQLR DDYPQEAWPR CAGRLEIAVQ
WMDEAAVSTI HGWCQRMLRE HAFDSGSLFT QTLETDHSEL LGQVMRDYWR RFCYGMQGDA
LAWVRGNWGS PDALLPRIRP LFGRVRAQQD GPEPAALIQA SLQQRGEQLA RLKAPWAQWA
EQLRQICRDA LAAKQVDGRK MQARYFEPWF DKLCAWAGDE QLVDLDLGTG FTRLTPAGMA
EAWKGEPPEH PGLNAMQSLQ QQLQALDSPD APLLEHAASW VSARFEVEKR RRAEMGFDDM
LVRLQHALAS EAGERLAGLI REQFPVALID EFQDTDPVQY GIFERIYQIS ENRADTGLFM
IGDPKQAIYA FRGADIYTYL AARRATRDRL HSLDTNYRSS KAMVAAVNQV FLQAEVRETG
RGAFLFRAAD DNPLPFIEVR AKGRGEQLLI DGETSAALQC WQLESEEAVS SSVYRQQLAA
SCASHIVALL NGGQQGTAGF QNAEGELRPC LPSDIAILVR DGHEAQVVRA ELAARDVRSV
YLSDKDSVFA AQEAHDLLAW LKACAEPDSE RLLKAALASL TLGLSLAALD QLNQDERVWE
GWVMRFRHYR DTWQRQGVLP MLRHLLHDFQ LPRTLIRRSD GERVLTNLLH LAELLQQAAG
ELDGEQALIR HLAEHLANSG QAGEEQILRL ESDEQLVKVV TIHKSKGLEY PLVYLPFICT
SKPVDGSRLP LAWHDSEGNA HLTLTPDQEQ IERADDERLA EDLRLLYVAL TRAQHACWLG
VADLKRGNQK SSQLHRSALG YLLGGGLALT GSQQLTDWLQ ALASTCPHIT CPGLPQANEQ
AYRVPHAERE LLPARKPRRA AAEHWWIASY SALRVGDQTL GADSSQAQQL LDDEAVDAQV
LREVPADSGD IHRFPRGPNP GTFLHGLLEW AGREGFSQVS GNPQLIERTV GQRCNRRDWT
GWIPTLSQWM QRLLGEALPL PGSDQSVMLG QLHHYQIEME FWFASHQVDA EQLDRLVARH
THPGLARPAA QPTVLNGMFK GFIDLAFELD GRYYVTDYKS NWLGPDIQAY DTQTMEKAII
EHRYDLQYVL YLLALHRQLR ARLPDYDYDR HVGGALFIFL RGASSSGHGV YHAKPPRELI
ESLDALFRGE HPPVQQDLFA GAVK
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