Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_4584 |
Symbol | |
ID | 5872392 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 5125168 |
End bp | 5126115 |
Gene Length | 948 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641549717 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001670806 |
Protein GI | 167035575 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.143082 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACACCC TGCAAAACAT GCGTGCTTTC AGTTGCGTAG CCCAGCTTGG CAGCTTTACC GCTGCTGCCG CGCAACTGGA TACGACCACC GCGAACGTGT CGCGGGCGGT CTCCAACCTG GAAGCCCATC TGCAAACAAG GCTGCTCAAC CGTACCACCC GCCGCATTGC GCTGACCGAG GCCGGCAAGC GTTACCTGAT GCGTTGCGAA CAGATTCTTA CCTATGTGGA AGAAGCCGAA GCCGAAGCCA GCGATGCCCA CGCCCGCCCG GCCGGGCAGT TGAAGGTGCA CTCGATGACC GGGGTGGGCC AGCACTTCGT GGTCGATGCC ATCGCCCGCT ACCGCGAGTC GCACCCGGAC GTCACCTTCG ACCTGACCAT GGCCAACCGC GTGCCCGACC TGCTCGACGA GGGTTATGAC GTGTCCATCG TGCTGGCCAC CGAACTGCCC GATTCGGGGT TCGTGTCACA GCGCCTTGGC ATCACCTACA GCATCGTCTG CGCCTCGCCC GGCTACATCG CCCGCCACGG CACTGCGCAC AAGCCCGCCG ACCTGCTCAA GCATGCCTGC CTTCGCATGG TCAGCCCGGT GATCCCGCTG GAAAAGTGGC TGTTCGACGG ACCGGAAGGC CAGGAGATGG TCAACATCAC CAGCTCGCCG TTCATGGTCA ACACCGCCGA TGCCATGAAG ACCGCGATCC GCAGCGGCAT GGGCGTAGGC GTGCTGCCGA TCTATTCGGC CATCGACGGC CTGCGTGACG GTAGCCTGGT GCGAGTGTTG CCCGAGTACC GCCTGCAGGA ACTGAACCTG TACGCCATCT ACCCATCGCG GCAGTACCTG GATGCCAAGA TCAAGACCTG GGTCGAGTAC CTGCGCAACT CGCTGCCAGA GATTCTCGCG GCCCATGAGG CGGACCTGAA AACCCATCAA GTGCTCATCG CCAACTAA
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Protein sequence | MDTLQNMRAF SCVAQLGSFT AAAAQLDTTT ANVSRAVSNL EAHLQTRLLN RTTRRIALTE AGKRYLMRCE QILTYVEEAE AEASDAHARP AGQLKVHSMT GVGQHFVVDA IARYRESHPD VTFDLTMANR VPDLLDEGYD VSIVLATELP DSGFVSQRLG ITYSIVCASP GYIARHGTAH KPADLLKHAC LRMVSPVIPL EKWLFDGPEG QEMVNITSSP FMVNTADAMK TAIRSGMGVG VLPIYSAIDG LRDGSLVRVL PEYRLQELNL YAIYPSRQYL DAKIKTWVEY LRNSLPEILA AHEADLKTHQ VLIAN
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