Gene PputGB1_4584 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_4584 
Symbol 
ID5872392 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp5125168 
End bp5126115 
Gene Length948 bp 
Protein Length315 aa 
Translation table11 
GC content63% 
IMG OID641549717 
ProductLysR family transcriptional regulator 
Protein accessionYP_001670806 
Protein GI167035575 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.143082 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones48 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACACCC TGCAAAACAT GCGTGCTTTC AGTTGCGTAG CCCAGCTTGG CAGCTTTACC 
GCTGCTGCCG CGCAACTGGA TACGACCACC GCGAACGTGT CGCGGGCGGT CTCCAACCTG
GAAGCCCATC TGCAAACAAG GCTGCTCAAC CGTACCACCC GCCGCATTGC GCTGACCGAG
GCCGGCAAGC GTTACCTGAT GCGTTGCGAA CAGATTCTTA CCTATGTGGA AGAAGCCGAA
GCCGAAGCCA GCGATGCCCA CGCCCGCCCG GCCGGGCAGT TGAAGGTGCA CTCGATGACC
GGGGTGGGCC AGCACTTCGT GGTCGATGCC ATCGCCCGCT ACCGCGAGTC GCACCCGGAC
GTCACCTTCG ACCTGACCAT GGCCAACCGC GTGCCCGACC TGCTCGACGA GGGTTATGAC
GTGTCCATCG TGCTGGCCAC CGAACTGCCC GATTCGGGGT TCGTGTCACA GCGCCTTGGC
ATCACCTACA GCATCGTCTG CGCCTCGCCC GGCTACATCG CCCGCCACGG CACTGCGCAC
AAGCCCGCCG ACCTGCTCAA GCATGCCTGC CTTCGCATGG TCAGCCCGGT GATCCCGCTG
GAAAAGTGGC TGTTCGACGG ACCGGAAGGC CAGGAGATGG TCAACATCAC CAGCTCGCCG
TTCATGGTCA ACACCGCCGA TGCCATGAAG ACCGCGATCC GCAGCGGCAT GGGCGTAGGC
GTGCTGCCGA TCTATTCGGC CATCGACGGC CTGCGTGACG GTAGCCTGGT GCGAGTGTTG
CCCGAGTACC GCCTGCAGGA ACTGAACCTG TACGCCATCT ACCCATCGCG GCAGTACCTG
GATGCCAAGA TCAAGACCTG GGTCGAGTAC CTGCGCAACT CGCTGCCAGA GATTCTCGCG
GCCCATGAGG CGGACCTGAA AACCCATCAA GTGCTCATCG CCAACTAA
 
Protein sequence
MDTLQNMRAF SCVAQLGSFT AAAAQLDTTT ANVSRAVSNL EAHLQTRLLN RTTRRIALTE 
AGKRYLMRCE QILTYVEEAE AEASDAHARP AGQLKVHSMT GVGQHFVVDA IARYRESHPD
VTFDLTMANR VPDLLDEGYD VSIVLATELP DSGFVSQRLG ITYSIVCASP GYIARHGTAH
KPADLLKHAC LRMVSPVIPL EKWLFDGPEG QEMVNITSSP FMVNTADAMK TAIRSGMGVG
VLPIYSAIDG LRDGSLVRVL PEYRLQELNL YAIYPSRQYL DAKIKTWVEY LRNSLPEILA
AHEADLKTHQ VLIAN