| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4583 |
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| Symbol | |
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| ID | 5872391 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 5123447 |
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| End bp | 5124976 |
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| Gene Length | 1530 bp |
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| Protein Length | 509 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641549716 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001670805 |
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| Protein GI | 167035574 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.244926 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCGCGTC GCATCATCAG AACGCTCAAT GCGTTCAGTG CCTGTGCCCT TGCCCTCACC
TTGAGTGGCT GTATCGGAAC CTGGGGCATC GCCCCGCAAA GCAAGACGCT GCAAGCCAAT
ACCTTGACCA CCGACGCGGC CATACGCGAA GCCGCGACCG ACGCCCATTG GCCTGACCAG
CAGTGGTGGC ACGCCTATGG CGACCCGCAG CTGGACCGCT GGATTGCCCT GGCCGTGGCC
GGCAGCCCAA GCCTGGCCAT GGCCGCGGCG CGGGTGCGCG AAGCCAAGGC CATGGCTGGC
GTGGTCGAGT CGGCGGAAAA GCTCCAGGCC AACGGCCAGG CCACGCTCAA GCGCCACAAC
TGGCCTGAAG ACCAGTTCTA CGGCCCTGGC GCGCTGTCGG GCGCCAACAC CTGGGACAAC
AACGCTGCCA TTGGCTTCAG CTACGCCCTC GACCTGTGGG GGCGCGAGCG CAACGCCAGT
GAGCAGGCCG TGGACCAGGC GCACATGAGC GTGGCCGAAG CCCGCCAGGC GCAACTGGAG
CTGCAGAACA ACGTGGTGCG CGCCTACATC CAGCTGAGCC TGCACTTTGC CCAGCGCGAT
ATCGTCAAGG CCGAACTGGA GCAGCAGGAG CAGATCCTGG CGCTGGCCAA GCGTCGCCTG
GATGCCGGCA TCGGCACTCA CTTCGAAGTC AGCCAGGCCG AAGCGCCGCT GCCGGAAACC
CACCGTCAGC TCGACAGCCT CGACGAAGAA ATTGCCCTGA CCCGCAACCA GCTGGCGGCG
TTGGCTGGCA AAGGCCCGGG GGAGGGCGCA CAGTTGCAGC GCCCGACCCT GGCCCTGGCC
GCGCCGCTGA AGCTGCCCTC GAACCTGCCT GCCGAACTGG TCGGCCAGCG CCCCGATGTG
GTCGCCAGCC GCTGGCAGGT GGCCGCTCAA GCGCGTGGCA TCGATGTTGC CCATGCCGGC
TTCTTCCCCA ACGTCGACCT GGTCGGCAGC CTGGGCTTCA TGGCTACCGG TGGTGGCCCG
CTGGAGTTCC TGACCGGGCG CAAGTTCAAC TACAACGTCG GCCCGGCGAT CAGCTTGCCG
ATCTTCGACG GTGGCCGCCT GCGTTCGGAG CTGGGCGTGG CCTCGGCGGG GTACGACGTA
GCGGTGGCGC GCTACAACCA GACCGTGATT GGTGCGCTGA AGAACATTTC CGACCAGTTG
ATCCGCCGCG AGTCGATGAA AGAGCAGTCG CACTTCGCGG CCGAGTCCGT CGCCGCAGCT
CAGAAAACCT ACGACATCGC CATGGTCGCC TTCCAGCGCG GCCTTACCGA CTACCTGAAC
GTGCTCAATG CGCAGACATT GCTGTTCCGC CAGCAGCAGG TGCAGCAACA GGTGCAGGCC
GCCCGCCTGG TCGCCCATGC CGAGCTGGTC ACCGCCCTGG GCGGCGGCCT GCAGGCCGGC
CAGGATGTGC CGAAGGAGGA ACGCCAGGCT GCGCCGAAAA CCCCGGCTAC CCTGGCCATT
TTCGACAAGA AGCCGGATAA CGCCGAATGA
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| Protein sequence | MPRRIIRTLN AFSACALALT LSGCIGTWGI APQSKTLQAN TLTTDAAIRE AATDAHWPDQ
QWWHAYGDPQ LDRWIALAVA GSPSLAMAAA RVREAKAMAG VVESAEKLQA NGQATLKRHN
WPEDQFYGPG ALSGANTWDN NAAIGFSYAL DLWGRERNAS EQAVDQAHMS VAEARQAQLE
LQNNVVRAYI QLSLHFAQRD IVKAELEQQE QILALAKRRL DAGIGTHFEV SQAEAPLPET
HRQLDSLDEE IALTRNQLAA LAGKGPGEGA QLQRPTLALA APLKLPSNLP AELVGQRPDV
VASRWQVAAQ ARGIDVAHAG FFPNVDLVGS LGFMATGGGP LEFLTGRKFN YNVGPAISLP
IFDGGRLRSE LGVASAGYDV AVARYNQTVI GALKNISDQL IRRESMKEQS HFAAESVAAA
QKTYDIAMVA FQRGLTDYLN VLNAQTLLFR QQQVQQQVQA ARLVAHAELV TALGGGLQAG
QDVPKEERQA APKTPATLAI FDKKPDNAE
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