| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4516 |
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| Symbol | |
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| ID | 5872323 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 5053146 |
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| End bp | 5054513 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641549649 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
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| Protein accession | YP_001670738 |
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| Protein GI | 167035507 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.513234 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.811542 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTAAGC CACTATCACT CAGCCAGCTG ACCACAGCAC TGAGTGGTCG ACAAATCGGT
GCCGACGCCA CGTTTACCGG TGTCAGCATC GACAGCCGCA GTGTCGGCGC CGGGCAACTG
TTCGTCGCCC TGGCCGGTCC GCGTTTCGAT GGTCACGACT ACCTGGCCGA TGTAAAAGCC
AAAGGCGCGG TCGCAGCCTT GGTAGAGCGT GAAGTCGCCG ATGTAGACCT GCCACAGCTG
TTGGTGGCCG ATTGCCGCCT GGCCCTTGGC CAACTCGGTG CATTGAACCG CGCCGCATTC
GACAAACCGG TGGTGGCCAT TACCGGCTCC AGCGGCAAGA CCACGGTCAA GGAAATGCTC
GCCAGCATCC TGCGTACCCG TGGCCTGGTG CACGCTACCC GTGGCAACTT GAACAACGAC
CTCGGTGCGC CGCTGACACT GCTGGAGATC GCCCCGGAGC ACAGCGCCGC AGTGATCGAG
CTGGGCGCCT CGCGCATCGG TGAGATCCGC TACACCGTGG GCCTGACCCA GCCGCAGGTG
GTCATCATCA ACAACGCCGG TACCGCCCAC GTTGGCGAGT TCGGCGGCCC GGAGAAGATT
GTCGAAGCCA AGGGCGAGAT TCTCGAAGGC CTGGGCGAGG GCGGCATTGC CATCCTCAAC
CTGGACGACA AGGCCTTCGC CATCTGGAGT GCGCGTGCCG GCTCGCACAA GGTCGTCAGT
TTCGCGCGCA GCAACCCGAA GGCCGATTTC CACGCCACGG ACATCGGTCG CGATGCACGT
GGCTGTCCGT CGTTCAAGCT GCATGGCGCG GGTGAAACAG TAGACGTGCA ACTCAATGTG
CTGGGCGAGC ACAACGTCAG CAATGCCCTG GCCGCTGCCG CCGCTGCGCA TGCCGTTGGT
CTGAGCCTGA ACGGTATTGC TGCCGGCCTG GCTGCAGTGC AGCCGGTCAA GGGCCGTACC
GTGGCACAGA TTGCGCCGAA CGGGGTACGG GTGATCGACG ACAGTTACAA CGCAAATCCC
TCCTCCATGT GCGCGGCCAT TGATATACTC GCCGGCTTTT CCGGACGCAC CGTCCTGGTG
CTTGGGGATA TCGGCGAATT GGGGCAATGG GCGGAAGAAG GCCATCGTCA GGTGGGTGAC
TACGCGCGTG GCAAGGTCGA TGCCCTGTAC GCAGTGGGTT CCAACATGAC ACACGCGGTC
AAGGCGTTCG GCGCCAATGG CCGCCATTTC GCTACTCAAG CTGAGCTGAT CGACGCAGTT
AGCGCCGAAC ACGCCAGCGA CACCACTATT TTGATCAAGG GCTCGCGCAG CGCTGCGATG
GAAAACGTCG TGGCGGCATT GTGCGGTGCC AGCGGGGAGA AACATTAA
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| Protein sequence | MLKPLSLSQL TTALSGRQIG ADATFTGVSI DSRSVGAGQL FVALAGPRFD GHDYLADVKA
KGAVAALVER EVADVDLPQL LVADCRLALG QLGALNRAAF DKPVVAITGS SGKTTVKEML
ASILRTRGLV HATRGNLNND LGAPLTLLEI APEHSAAVIE LGASRIGEIR YTVGLTQPQV
VIINNAGTAH VGEFGGPEKI VEAKGEILEG LGEGGIAILN LDDKAFAIWS ARAGSHKVVS
FARSNPKADF HATDIGRDAR GCPSFKLHGA GETVDVQLNV LGEHNVSNAL AAAAAAHAVG
LSLNGIAAGL AAVQPVKGRT VAQIAPNGVR VIDDSYNANP SSMCAAIDIL AGFSGRTVLV
LGDIGELGQW AEEGHRQVGD YARGKVDALY AVGSNMTHAV KAFGANGRHF ATQAELIDAV
SAEHASDTTI LIKGSRSAAM ENVVAALCGA SGEKH
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