| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4514 |
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| Symbol | murD |
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| ID | 5872321 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 5050711 |
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| End bp | 5052063 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641549647 |
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| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
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| Protein accession | YP_001670736 |
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| Protein GI | 167035505 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.66226 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.811542 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTGT CTTTGATCGC TTCCGACCAA TTCCGCATCG TTGTCGGCCT CGGCAAGAGC
GGCATGTCCC TGGTTCGCTT CCTGGCGAAC CGGGGCATTG CCTTTGCGGT CGCCGACACC
CGCGAGCAAC CGCCGGAACT GGACACCCTG CGCCGTGATT ACCCGCAGGT GGAAGTGCGC
TGTGGTGAGT TGGACGTGGA CTTCCTGTGC CGCGCCAACG AGCTGTACGT GAGCCCTGGC
CTGGCCTTGG CCACGCCGGC CCTGCAGCAG GCGGCCGCGC GCGGCGTGAA GCTGTCCGGC
GATATCGAGT TGTTCGCCCG CCATGCCACC GCGCCGATCA TTGCCATCAG CGGTTCCAAC
GCCAAGAGCA CCGTCACTAC CCTGGTCGGC GAAATGGCCG CCAAGGCCGG CAAGCGCGTG
GCCGTGGGCG GCAACCTCGG TACTCCGGCG CTGGACCTGC TGGCCGATGA TGTCGAGCTG
TACGTGCTGG AGCTGTCCAG CTTCCAGCTG GAAACCACTG ACCAGCTCAA CGCTGAAGTG
GCTACGGTGC TGAACATCAG CGAAGACCAC ATGGATCGCT ACAGCGGCCT GCCTGCCTAC
CACTTGGCCA AGCACCGGAT CTTCCGGGGC GCCAAGCAGG TGGTGGTCAA CCGTCAGGAC
GCCCTGAGCC GGCCGCTGCC GGTGGAAGGC CGCCCATGCT GGACCTTCGG CCTCAACCAG
CCGGACTTCA AGGCCTTTGG CCTGCGTGAA GTGGATGGCG AAAAATACCT GGCGTTCGAG
TTCCAGGCGC TGATGCCGGC GCGCGAGCTG AAGGTTCGCG GCGCTCACAA CCAGAGCAAC
GCCCTGGCGG CCCTGGCCTT GGGGCATGCC GCCGGCCTGC CGTTCGAGCC CATGCTCGAA
GCCCTGCGTG AGTTCGGTGG CCTGGCCCAC CGTTGCCAGT GGGTACGCGA GCGTAACGGG
GTGAACTGGT ACGACGATTC CAAGGCCACC AACGTGGGTG CTGCCCTGGC CGCCATCGAA
GGCCTGGGGG CCGATATCGA AGGCAAGCTG GTGCTGATTG CCGGTGGCGA TGGCAAGGGC
GCTGAATTCA CCGCACTGCG CGAGCCGGTC AAGCGTTTCT GCCGCGCCGT GGTGTTGCTG
GGGCGTGATG CCGAGCGTCT GGCCGACGCC TTGGGCGATG ACGTGCCGCT GGTACGGGTC
AAGAGCCTCG ACGACGCCGT GCAGCAGTGT GCCCAGCTGG CCCAGGCCGG TGATGCCGTG
CTGCTGTCGC CGGCGTGCGC CAGCCTCGAC ATGTTCAAGA ACTTCGAAGA ACGCGGGCGC
CTGTTCGCCC AGGCAGCGGG AGGCCTTGCA TGA
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| Protein sequence | MSVSLIASDQ FRIVVGLGKS GMSLVRFLAN RGIAFAVADT REQPPELDTL RRDYPQVEVR
CGELDVDFLC RANELYVSPG LALATPALQQ AAARGVKLSG DIELFARHAT APIIAISGSN
AKSTVTTLVG EMAAKAGKRV AVGGNLGTPA LDLLADDVEL YVLELSSFQL ETTDQLNAEV
ATVLNISEDH MDRYSGLPAY HLAKHRIFRG AKQVVVNRQD ALSRPLPVEG RPCWTFGLNQ
PDFKAFGLRE VDGEKYLAFE FQALMPAREL KVRGAHNQSN ALAALALGHA AGLPFEPMLE
ALREFGGLAH RCQWVRERNG VNWYDDSKAT NVGAALAAIE GLGADIEGKL VLIAGGDGKG
AEFTALREPV KRFCRAVVLL GRDAERLADA LGDDVPLVRV KSLDDAVQQC AQLAQAGDAV
LLSPACASLD MFKNFEERGR LFAQAAGGLA
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