| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4481 |
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| Symbol | |
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| ID | 5872288 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 5013615 |
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| End bp | 5016659 |
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| Gene Length | 3045 bp |
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| Protein Length | 1014 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641549614 |
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| Product | multidrug efflux protein |
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| Protein accession | YP_001670703 |
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| Protein GI | 167035472 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0750514 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.872704 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGTTCA CCGACCCGTT CATCCGCCGC CCGGTGCTGG CCAGTGTGGT CAGCCTGCTG
ATCCTGCTGC TGGGCTTCCA GGCCTGGAAC AAGCTGCAGA TCCGCCAGTA CCCGCAGATG
GAAAACGCCC TGATCACGGT AACTACCGCC TACCCTGGGG CCAACGCCGA AACCATCCAG
GGCTACATCA CCCAGCCGCT GCAACAAAGC CTGGCCAGCG CCGAAGGCAT CGACTACATG
ACCTCGGTGA GCCGGCAGAA CTTCTCGATC ATTTCCATCT ACGCGCGGAT CGGCGCCGAC
AGCGACAGGC TGTTCACCGA GTTGCTGGCC AAGGCCAACG AAGTGCGCAA CAAGCTGCCC
CAGGACTCCG AAGACCCGGT ACTGAGCAAG GAAGCCGCCG ATGCCTCGGC GCTGATGTAC
GTCAGCTTCT ACAGCAAGGA AATGAGCAAC CCGCAGATCA CCGACTACCT GTCGCGGGTG
ATCCAACCCA AGCTGGCCAC TTTGCCGGGC ATGGCCGAGG CGGAAATCCT CGGCAACCAG
GTGTTCGCCA TGCGGCTGTG GCTGGACCCG GTCAAACTGG CCGGTTTCGG CCTGTCGGCC
ACCGACGTGA CCAACGCCGT ACGCCGCTAC AACTTCCTCT CCGCCGCCGG CGAGGTAAAG
GGCGAATACG TGGTCACCAG TATCAACGCC AGTACCGAGT TGAAGTCGGC CGAGGCGTTC
GCCGCCCTGC CGGTCAAGAC CAGCGGTGAC AGCCGCGTGC TGCTGGGCGA TGTGGCGCGG
GTCGAAATGG GCGCGGAAAA CTACGACACG GTCAGCTCGT TCGATGGCAC CCCGTCGGTG
TACATCGGCA TCAAGGCCAC CCCCGCCGCC AACCCGCTGG AGGTGATCAA GGAAGTGCGG
CGCATCATGC CCGAACTGCA AAGCCAGCTG CCCTCGGCCC TGAAAGTGTC GATCGCCTAC
GACGCCACAC TGTTCATCCA GGCCTCCATC GACGAAGTGA TCAAGACCCT CGGCGAAGCG
GTGCTGATCG TCATCGTGGT GGTGTTCCTG TTCCTCGGTG CCCTGCGTTC GGTACTGATC
CCGGTGGTGA CCATACCGTT GTCGATGATC GGCGTGCTGT TCTTCATGCA GATGATGGGC
TATTCGCTTA ACTTGCTGAC CCTGCTGGCG ATGGTCCTGG CCATCGGTCT GGTGGTGGAC
GATGCCATTG TCGTGGTGGA AAACATCCAC CGGCACATGG AGGAAGGGAA GTCACCGTTC
GACGCAGCCC TGGAAGGTGC CCGCGAGATC GCCATGCCCG TGGTGTCGAT GACCATCACC
TTGGCCGCCG TATACGCACC GATCGGCTTC CTCACCGGGC TCACAGGGGC CCTGTTCAAG
GAGTTCGCCC TGACCCTGGC TGGGGCGGTG ATCATTTCCG GTATCGTTGC CCTCACCCTG
TCACCGATGA TGTGCGCCCT GCTGCTGCGC CAGGAGCAGA ACCCCAGCGG CCTGGCCCAC
CGCCTCGACC AACTGTTCGA ACGCCTGAAG GTGCGCTACC AGAAGCTGCT GCACGCCACC
CTCGACAGCC GGCCGGTAGT GCTGGTGTTT GCCGTGATCA TCCTGTGCCT GATCCCGGTG
CTGCTCAAGT TCACCCAGAA CGAACTGGCG CCCAACGAGG ACCAGGGGGT GATATTCATG
ATGAGCAGTT CGCCGCAACC GGCCAACCTC GATTACCTCA ACGCCTACAC CGACCAGTTC
ACGCCGCTGT TCAAGGCTTT CCCCGAATAC TACTCATCGT TCCAGATCAA CGGTTTCAAC
GGCGTGCAGA CCGGCATTGG TGGCTTTTTG CTCAAGCCCT GGAACGAGCG CGAGCGCACG
CAGATGGAGT TGCTGCCGCT GGTGCAGGCC AAACTCGAAG AAATCGGCGG CCTGCAGATC
TTCGGCTTCA ACCTGCCGTC GTTGCCGGGC ACTGGCGAGG GCCTGCCGTT CCAGTTCGTG
ATCAATACCG CTGGCGACTA CCCAGCACTG CTGGAAGTGG CCCAGCGCAT CAAGGCGCGC
GCGCAGGAAT CGGGCAAGTT CGCCTTCCTC GACGTCGACC TAGCCTTCGA CAAGCCCGAG
GTGGTGGTGG ATATCGACCG GGCCAAGGCG GCGCAGATGG GGGTGTCGAT GGACACCCTC
GGCGGCACCC TTGCGACCTT GCTGGGCGAA GCGGAAATCA ACCGCTTCAC GCTTGAGGGC
CGCAGCTACA AGGTGATCGC CCAGGTAGAA CGGCCGTACC GCGACAACCC GGGCTGGCTG
AACAACTACT ACGTGAAGAA CGACCAGAAC CAATTGCTGC CGCTGTCGAC CCTGATCACC
CTCACCGACC GCGCCCGCCC ACGCCAGCTC AATCAGTTCC AGCAACTGAA CTCGGCCATC
ATCCAGGGCG TGCCCATGGT CAGCCTGGGC GAAGCGCTGA AGACCGTGCA GGACATCGCC
CGCGAAGAGG CACCGGAAGG CTTCGCCTTC GACTATGCCG GCGTGGCCCG CCAGTATGTT
CAGGAAGGCA GCGCGCTGTG GGTTACCTTC GGCCTGGCAC TGGCGATCAT CTTCCTGGTG
CTGGCGGCGC AGTTCGAAAG CTTCCGCGAC CCGTTGGTGA TTCTGGTAAC CGTGCCCTTG
TCGATCTGTG GCGCGCTGTT GCCGCTGTTC CTGGGCATAT CGAGCATGAA CATCTACACC
CAGGTCGGCC TGGTGACCTT GATCGGCCTG ATCAGCAAGC ACGGCATTCT CATTGTCGAG
TTCGCCAATC AGTTGCGTGA GGAGCGCGGC TTGAGCGTGC GCGAGGCCAT CGAGGAAGCG
GCGGCGATTC GCCTGCGGCC GGTGCTGATG ACCACGGCGG CGATGGTGTT CGGCATGGTG
CCGCTGATTC TCGCGACCGG GGCGGGGGCG GTCAGCCGTT TTGACATCGG GACGGTGATT
GCCACCGGGA TGTCGATTGG CACGCTGTTT ACCCTGTTTG TGCTGCCTTG TATCTATACC
TTGTTGGCGC ACAAGGCGAA AGCCAAGGAA GCTGCAATAG CCTGA
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| Protein sequence | MAFTDPFIRR PVLASVVSLL ILLLGFQAWN KLQIRQYPQM ENALITVTTA YPGANAETIQ
GYITQPLQQS LASAEGIDYM TSVSRQNFSI ISIYARIGAD SDRLFTELLA KANEVRNKLP
QDSEDPVLSK EAADASALMY VSFYSKEMSN PQITDYLSRV IQPKLATLPG MAEAEILGNQ
VFAMRLWLDP VKLAGFGLSA TDVTNAVRRY NFLSAAGEVK GEYVVTSINA STELKSAEAF
AALPVKTSGD SRVLLGDVAR VEMGAENYDT VSSFDGTPSV YIGIKATPAA NPLEVIKEVR
RIMPELQSQL PSALKVSIAY DATLFIQASI DEVIKTLGEA VLIVIVVVFL FLGALRSVLI
PVVTIPLSMI GVLFFMQMMG YSLNLLTLLA MVLAIGLVVD DAIVVVENIH RHMEEGKSPF
DAALEGAREI AMPVVSMTIT LAAVYAPIGF LTGLTGALFK EFALTLAGAV IISGIVALTL
SPMMCALLLR QEQNPSGLAH RLDQLFERLK VRYQKLLHAT LDSRPVVLVF AVIILCLIPV
LLKFTQNELA PNEDQGVIFM MSSSPQPANL DYLNAYTDQF TPLFKAFPEY YSSFQINGFN
GVQTGIGGFL LKPWNERERT QMELLPLVQA KLEEIGGLQI FGFNLPSLPG TGEGLPFQFV
INTAGDYPAL LEVAQRIKAR AQESGKFAFL DVDLAFDKPE VVVDIDRAKA AQMGVSMDTL
GGTLATLLGE AEINRFTLEG RSYKVIAQVE RPYRDNPGWL NNYYVKNDQN QLLPLSTLIT
LTDRARPRQL NQFQQLNSAI IQGVPMVSLG EALKTVQDIA REEAPEGFAF DYAGVARQYV
QEGSALWVTF GLALAIIFLV LAAQFESFRD PLVILVTVPL SICGALLPLF LGISSMNIYT
QVGLVTLIGL ISKHGILIVE FANQLREERG LSVREAIEEA AAIRLRPVLM TTAAMVFGMV
PLILATGAGA VSRFDIGTVI ATGMSIGTLF TLFVLPCIYT LLAHKAKAKE AAIA
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