| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4474 |
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| Symbol | |
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| ID | 5872282 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 5004854 |
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| End bp | 5006905 |
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| Gene Length | 2052 bp |
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| Protein Length | 683 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641549609 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001670698 |
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| Protein GI | 167035467 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.192175 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAGCTGG AATTGCGGAA CAGCTTGTCG GTCAAGTTGC TCAGGGTCGT GCTGCTGTCG
GCGCTGGCGG TCGGCGTCGT GCTCAGCTGT GCGCAAATCG TCTACGACAC CTACAAGACC
CGCCAGGCCG TGAACAATGA TGCCCAGCGC ATCCTCGACA TGTTCCGCGA CCCTTCGACC
CAGGCGGTGT ACAGCCTCGA CCGCGAAATG GGCATGCAGG TGATGGAATG CCTGTTCCAG
GACGAATCGG TGCGCATGGC CTCCATTGGC CACCCCAACG AAACCATGCT GGCAGAAAAG
TCACGTCCAT TGCAGGACAT GTCCATGCGC TGGCTCACCG ACCTGATCCT CGGCCAGGAA
CGCACCTATA CCACGCAACT GGTTGGCCGC GGCCCCTACA GCGAATACTA CGGCGACCTC
AGCATTACCC TGGACACCTC GTCCTACGGT GAAGACTTCC TGATCAACGC GGTGATCATC
TTCATTTCCG GCGTGCTGCG GGCCCTGGCC ATGGGCCTGG TGCTGTATCT GGTGTACCAC
TGGCTGCTGA CCAAACCGCT GTCGAAGATC ATCGAGCACC TCACCCAGAT CAACCCCGAC
CGCCCCAGCC AGCACCAGCT ACCGCTGCTC AAAGGCCACG AGAAGAACGA GCTGGGCCTG
TGGGTGAACA CCGCCAACCA GTTGCTGGCC TCGATCGAGC GCAACACCCA CCTGCGCCAC
GAGGCGGAAA ACAGCCTGCA GCGCATGGCC CAGTACGACT TCCTCACCGG TCTGCCCAAC
CGCCAGCAAT TGCAGCAGCA ACTGGACAAG ATTCTTGTCG ACGGCGGCCG CCTGCAGCAT
CGCGTGGCGG TACTGTGCGT GGGTCTGGAC GATTTCAAGG GCATCAACGA GCAATTCAGC
TACCAGGTCG GTGACCAGCT GCTGCTGGCC CTGGCCGACC GCCTGCGCGC CCACAGCGGC
CGCCTGGGCG CGCTGGCGCG GTTGGGCGGC GACCAGTTCG CCCTGGTGCA GGCCAATATC
GAGCAGCCCT ACGAAGCGGC CGAACTGGCG CAAAGCATCC TCGACGACCT GGAAGTGCCG
TTCGACCTCG ACCACGAGCA GATCCGCCTG CGCGCCACCA TCGGCATCAC CCTGTTCCCT
GAAGACGGCG ACAGCACCGA GAAACTGCTG CAGAAAGCCG AACAGACCAT GACCCTGGCC
AAGGCCCGTT CGCGCAACCG CTACCAGTTC TACATCGCCA GCGTCGACAG CGAGATGCGC
CGCCGCCGCG AGCTGGAAAA GGACCTGCGT GAAGCCTTGC CGCGCAACCA GCTGTACCTG
GTGTATCAGC CACAGATCAG CTACCGCGAC CACCGCGTGG TCGGCGTAGA GGCGCTGTTG
CGTTGGCAGC ACCCGGAGCT GGGCATGGTG CCACCCGACC AGTTCATCCC CCTGGCCGAG
CAGAACGGCA GCATCATCAG CATCGGCGAG TGGGTGCTGG ACCAGGCTTG CCGGCAATTA
CGCGAATGGC ACGACCAGGG CTTCAGCGAC CTGCGCATGG CAGTCAACCT GTCCACCGTG
CAGTTGCACC ACAGCGAGCT GCCACGGGTG GTCAACAACC TGCTGCAGGC CTATCGCCTG
CCGCCGCGCA GCCTGGAGCT GGAGGTCACC GAAACCGGCC TGATGGAAGA CATCAGCACC
GCCGCCCAGC ACCTGCTGAG CCTGCGCCGC TCCGGGGCGC TTATTGCCAT CGATGACTTC
GGCACCGGCT ACTCATCGCT CAGTTACCTG AAGTCGCTAC CGCTGGACAA GATCAAGATC
GACAAGAGCT TCGTCCAGGA CCTGCTCGAC GACGATGACG ACGCCACCAT CGTTCGCGCC
ATCATCCAGC TGGGCAAGAG CCTGGGCATG CAGGTAATCG CCGAAGGCGT GGAAACCGCC
GAGCAAGAAA CCTACATCGT TGCCCAGGGT TGCCACGAGG GCCAGGGTTA CCACTACAGC
AAGCCGCTGT CGGCCCGCGA GCTGACCCAC TTCCTCAAGC AGGCGCAACG CAACCAGGTT
TCGATGTTCT GA
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| Protein sequence | MKLELRNSLS VKLLRVVLLS ALAVGVVLSC AQIVYDTYKT RQAVNNDAQR ILDMFRDPST
QAVYSLDREM GMQVMECLFQ DESVRMASIG HPNETMLAEK SRPLQDMSMR WLTDLILGQE
RTYTTQLVGR GPYSEYYGDL SITLDTSSYG EDFLINAVII FISGVLRALA MGLVLYLVYH
WLLTKPLSKI IEHLTQINPD RPSQHQLPLL KGHEKNELGL WVNTANQLLA SIERNTHLRH
EAENSLQRMA QYDFLTGLPN RQQLQQQLDK ILVDGGRLQH RVAVLCVGLD DFKGINEQFS
YQVGDQLLLA LADRLRAHSG RLGALARLGG DQFALVQANI EQPYEAAELA QSILDDLEVP
FDLDHEQIRL RATIGITLFP EDGDSTEKLL QKAEQTMTLA KARSRNRYQF YIASVDSEMR
RRRELEKDLR EALPRNQLYL VYQPQISYRD HRVVGVEALL RWQHPELGMV PPDQFIPLAE
QNGSIISIGE WVLDQACRQL REWHDQGFSD LRMAVNLSTV QLHHSELPRV VNNLLQAYRL
PPRSLELEVT ETGLMEDIST AAQHLLSLRR SGALIAIDDF GTGYSSLSYL KSLPLDKIKI
DKSFVQDLLD DDDDATIVRA IIQLGKSLGM QVIAEGVETA EQETYIVAQG CHEGQGYHYS
KPLSARELTH FLKQAQRNQV SMF
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