| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4402 |
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| Symbol | |
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| ID | 5872209 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 4926985 |
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| End bp | 4927677 |
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| Gene Length | 693 bp |
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| Protein Length | 230 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641549536 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001670626 |
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| Protein GI | 167035395 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 0.53311 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGCCTTG ACCGTTTTCT CGCCAACCTG CCCAGCCACA ACCGCCAGCA AGCCCGACTG
ATGCTGGCGC AACGCCGCGT GCGGGTGGAC GGCCAGGTTG TCAGCGACCC ACTGGCCGAA
GTGCGTGAAT TCAGCCGCGT GGAGCTGGAC GAGCAACTGC TGCAGGCCGG CCGCCCGGCC
CGCTACCTGA TGCTGCACAA GCCCACTGGC TGCGTCAGCG CCACCCAAGA CCCACAGCAC
CCGACCGTGC TCGACCTGCT GCCCGCAGCG TTGCGGGATG ACCTGCACAT AGCCGGGCGC
CTGGACTTCA ACACCACCGG CCTGATGATC CTGACCAACG ATGGCCAGTG GTCAAGGCGC
CTGACCCAGC CTGCCACCAA GTTGCCCAAG CATTACCTGG TGGACACCGA GGACGAAATT
GGCGAGCACT ATGTGGCCAG GTTTCGCGAG GGGTTCTATT TCGCCTTCGA AAACCTCACC
ACCCAACCTG CCCTGCTGGA CATCCTCGGC CCGCGCCAGG CCCGGCTGGC GATCGTCGAA
GGGCGTTATC ACCAGGTCAA GCGCATGTTC GGGCACTTCA ACAACAAGGT GGTGGGGTTG
CACCGGGAAA GCATGGGCGC AATCTGTCTG GACCCTGGTT TGGCGCCCGG GGAGTTTCGT
GAACTGACGG CTGATGAAAT AGCCACTGTC TAG
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| Protein sequence | MRLDRFLANL PSHNRQQARL MLAQRRVRVD GQVVSDPLAE VREFSRVELD EQLLQAGRPA
RYLMLHKPTG CVSATQDPQH PTVLDLLPAA LRDDLHIAGR LDFNTTGLMI LTNDGQWSRR
LTQPATKLPK HYLVDTEDEI GEHYVARFRE GFYFAFENLT TQPALLDILG PRQARLAIVE
GRYHQVKRMF GHFNNKVVGL HRESMGAICL DPGLAPGEFR ELTADEIATV
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