| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4396 |
|---|
| Symbol | |
|---|
| ID | 5872203 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 4921567 |
|---|
| End bp | 4922598 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641549530 |
|---|
| Product | membrane protein AbrB duplication |
|---|
| Protein accession | YP_001670620 |
|---|
| Protein GI | 167035389 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3180] Putative ammonia monooxygenase |
|---|
| TIGRFAM ID | [TIGR03082] membrane protein AbrB duplication |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGATC GTTCGTTGCC GTTGTTTGTC GCGACCGGGC TGGTCGGCCT TGCTGGCGGT
TTTGCCGCCA GCAAGGTCGG CTGGCCTTTG CCGTGGATGG TCGGCTCATT GCTGGCGATC
ATCCTGGTGC GCTGCCTGAC CCCCTGGCAG CTGTCGGAAA TACCCAATGG CCGCAAGTGC
GGGCAGTGGA TCATCGGTAT CGGCATTGGC CTGCATTTCA CGCCGGCGGT GATCGAGCAG
GTGGCCAGTC ATTTCGCGCT GATCTTTTTC GGCGCGTTGT TCACCACCCT GTCCAGTGTG
ATCAGCGTAT GGTTGCTGCG GCGAACCGGC GAAGACCGCG CCACGGCGTT CTTCGCCAGC
ATGCCCGGCG GTTCGGGGGA GATGGTCAAC CTTGGCGCGC GCAATGGTGC GGTGCTCAGC
CAGGTCGCGG CAGCGCAGAG CTTGCGCGTG CTGGCTGTGG TGCTGTGCGT GCCTGCGCTG
TTCAAGTTTT TGCTGGGTGA CGGGGTGCCG CTGAACCACA CCGGTAGCGT GAGCTGGGGT
TGGTTGGCCT TGATTGCCCC GCTGGGCGTT GCCGTTGCGT TGCTCTGGCA GCGTTTGCGC
CAGCCTAACC CGTGGCTGTT CGGGCCATTG CTGGTGGCGG CCACGGTCAG CCTGGCCGGT
AACCTGCAGA TCGCCCTGCC CAATGGCGCC AGCCAAATCG GCCAGTGGCT GATAGGCAGT
GGCCTGGCCT GTCACTTCAA CCGCGCGTTC TTCCGCCGCG CACCGTCGTT CCTCGGGCGC
ACCCTGGTGG CCACGGCATT GTGCATGGCG ATTGCCGCCA GCGCCGCATG GGTGCTGAGC
GTGATGACTG CGCTGGACTT GCGTTCGCTG ACACTGGGGA TGATGCCGGG TGGGATTGCC
GAGATGAGCC TGACGGCGGA GACACTGCAG TTGTCGGTGC CTTTGGTGAC GGCACTGCAG
GTGATGCGCT TGCTGTTCGT GCTGTTTCTG GCGGAGCCTT TGTTCCGCTT GTGGAATGCG
AACCCGCAAT AA
|
|---|
| Protein sequence | MPDRSLPLFV ATGLVGLAGG FAASKVGWPL PWMVGSLLAI ILVRCLTPWQ LSEIPNGRKC
GQWIIGIGIG LHFTPAVIEQ VASHFALIFF GALFTTLSSV ISVWLLRRTG EDRATAFFAS
MPGGSGEMVN LGARNGAVLS QVAAAQSLRV LAVVLCVPAL FKFLLGDGVP LNHTGSVSWG
WLALIAPLGV AVALLWQRLR QPNPWLFGPL LVAATVSLAG NLQIALPNGA SQIGQWLIGS
GLACHFNRAF FRRAPSFLGR TLVATALCMA IAASAAWVLS VMTALDLRSL TLGMMPGGIA
EMSLTAETLQ LSVPLVTALQ VMRLLFVLFL AEPLFRLWNA NPQ
|
|---|
| |