| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4380 |
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| Symbol | algU |
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| ID | 5872187 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 4905363 |
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| End bp | 4905944 |
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| Gene Length | 582 bp |
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| Protein Length | 193 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641549514 |
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| Product | RNA polymerase sigma factor AlgU |
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| Protein accession | YP_001670604 |
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| Protein GI | 167035373 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.200849 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTAACCC AGGAAGAGGA TCAGCAGCTT GTCGAGCGCG TTCAGCGCGG CGACAGGCGA
GCGTTCGATC TGTTGGTGCT GAAGTATCAG CACAAGATTC TCGGGTTGAT CGTGCGGTTC
GTTCACGACA CCCACGAGGC CCAGGATGTA GCACAGGAAG CCTTTATCAA GGCCTACCGT
GCGCTTGGCA ACTTTCGCGG CGACAGTGCG TTTTATACGT GGCTGTACCG CATCGCCATC
AACACGGCGA AGAACTACCT GGTGTCCCGT GGAAGACGGC CGCCAGACAG CGATGTGAGC
TCCGAGGATG CGGAGTTTTA CGACGGCGAT CATGGTCTCA AGGATCTCGA GTCCCCAGAG
CGCTCGTTGT TGCGGGATGA AATCGAAGGC ACTGTCCATC GCACCATCCA GCAGCTGCCC
GAAGACCTGC GTACGGCATT GACCCTGCGC GAGTTCGACG GACTGAGTTA CGAAGACATT
GCCAGTGTCA TGCAATGTCC GGTGGGTACC GTGCGCTCTC GAATCTTCCG CGCTCGGGAG
GCCATAGACA AAGCCCTGCA GCCGTTGTTG CAGGAAACCT GA
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| Protein sequence | MLTQEEDQQL VERVQRGDRR AFDLLVLKYQ HKILGLIVRF VHDTHEAQDV AQEAFIKAYR
ALGNFRGDSA FYTWLYRIAI NTAKNYLVSR GRRPPDSDVS SEDAEFYDGD HGLKDLESPE
RSLLRDEIEG TVHRTIQQLP EDLRTALTLR EFDGLSYEDI ASVMQCPVGT VRSRIFRARE
AIDKALQPLL QET
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