Gene PputGB1_4377 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_4377 
Symbol 
ID5872184 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp4902153 
End bp4903586 
Gene Length1434 bp 
Protein Length477 aa 
Translation table11 
GC content62% 
IMG OID641549511 
Productprotease Do 
Protein accessionYP_001670601 
Protein GI167035370 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.937074 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.327825 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAATAC CACGCTTGAA ATCCTACCTA ACGATGTTCG CCGCCGTGCT CATGCTCGGC 
CAGGTGCTCA CCGCCCAGGC CGAGGAAGCC CTGCCGGACT TCACCAGCCT GGTCGAGCAG
GCCTCGCCGG CGGTGGTCAA CATCAGTACC AAGCAGAAGC TGCCGGATCG CCGCATCGCT
GCAGGGCAGA TGCCGGACCT GGAAGGCCTG CCGCCGATGT TCCGCGAGTT CTTCGAACGC
AACATGCCGC AACAACCGCG CTCGCCACGC GGTGACCGCC AGCGCGAGGC GCAGTCGCTG
GGCTCGGGCT TCATCATTTC CAGTGATGGC TACGTGCTCA CCAACAACCA CGTGGTCGCC
GACGCCGACG AGATCATCGT CCGCCTGTCG GACCGCAGCG AGCTGCAGGC CAAATTGGTC
GGCACCGACC CGCGTACCGA CGTGGCCCTG CTGAAGGTCG AGGGCAAGAA CCTGCCGATC
GTGAAGCTGG GTGATTCCGA GAAGCTCAAG GTGGGTGAGT GGGTACTGGC CATCGGTTCG
CCGTTCGGCT TCGACCATTC GGTGACCAAA GGTATCGTCA GCGCCAAGGG CCGGACCCTG
CCCAATGACA CCTACGTACC GTTCATCCAG ACCGACGTGG CCATCAACCC GGGTAACTCC
GGTGGTCCGC TGTTCAACAT GAAGGGCGAA GTGGTGGGTA TCAACTCGCA GATCTTCACC
CGTTCTGGCG GTTTCATGGG CTTGTCGTTC GCCATCCCGA TCGATGTGGC GATCGATGTC
TCCAACCAGC TGAAAAAAGA CGGCAAGGTC AGCCGTGGCT GGCTGGGTGT AGTGATTCAG
GAGGTCAACA AGGACCTGGC TGAATCCTTC GGCCTGGACA AGCCTGCGGG TGCCCTGGTG
GCCCAGGTAT TGGAAAACGG CCCGGCTGCC AAGGGCGGCC TGCAGGTGGG TGACGTGATC
CTCAGCATGA ACGGCCAGCC TATCGTCATG TCGGCCGACC TGCCGCACCT GGTTGGCGGC
CTCAAGGATG GCGAGAAGGC CAAGCTGGAA ATCATCCGCA ACGGCAAGCG TCAGAACCTG
GACATCAGCG TGGGCGCACT GCCGGACGAC GATGCCGACA TTGGCACTGG CGCCGAAGGC
AGCGCCGAGC GCAGCAGCAA CCGCCTGGGC GTATCGGTGG CCGACCTGAC CGCCGAGCAG
AAGAAATCCC TGGAGCTCAA GGGAGGCGTG GTCATCAAGG AAGTGCAGGA TGGCCCCGCA
GCCATGATTG GCCTGCGCCC GGGTGATGTC ATCAGCCACC TGAACAACCA GGCCATCGGT
TCGGCCAAGG AATTCACCGA AATCGCCAAG GAGCTGCCGA AGAACCGTTC GGTATCGATG
CGCGTCCTGC GTCAGGGGCG CGCCAGCTTC ATCACCTTCA AGCTTGCTGA ATAA
 
Protein sequence
MSIPRLKSYL TMFAAVLMLG QVLTAQAEEA LPDFTSLVEQ ASPAVVNIST KQKLPDRRIA 
AGQMPDLEGL PPMFREFFER NMPQQPRSPR GDRQREAQSL GSGFIISSDG YVLTNNHVVA
DADEIIVRLS DRSELQAKLV GTDPRTDVAL LKVEGKNLPI VKLGDSEKLK VGEWVLAIGS
PFGFDHSVTK GIVSAKGRTL PNDTYVPFIQ TDVAINPGNS GGPLFNMKGE VVGINSQIFT
RSGGFMGLSF AIPIDVAIDV SNQLKKDGKV SRGWLGVVIQ EVNKDLAESF GLDKPAGALV
AQVLENGPAA KGGLQVGDVI LSMNGQPIVM SADLPHLVGG LKDGEKAKLE IIRNGKRQNL
DISVGALPDD DADIGTGAEG SAERSSNRLG VSVADLTAEQ KKSLELKGGV VIKEVQDGPA
AMIGLRPGDV ISHLNNQAIG SAKEFTEIAK ELPKNRSVSM RVLRQGRASF ITFKLAE