| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4332 |
|---|
| Symbol | |
|---|
| ID | 5872139 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 4841998 |
|---|
| End bp | 4844106 |
|---|
| Gene Length | 2109 bp |
|---|
| Protein Length | 702 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641549466 |
|---|
| Product | molydopterin dinucleotide-binding region |
|---|
| Protein accession | YP_001670556 |
|---|
| Protein GI | 167035325 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAGA CCCTGCATCA CCGTGCCTGT CACCTGTGCG AAGCGATCTG CGGATTGAAC
ATCGAAGTCA GTCACGAAGA CGATGGGCGG GCGTTGATCA GCTCCATCAA GGGCGACCCG
CTGGACCCGT TCAGCCGTGG CCATGTCTGC CCCAAGGCTG TGGCGTTGCA GGACATTCAG
AATGATCCGG ATCGCCTGCG CCAGCCACAC AAGCGAGTAG GCGAGCATTG GCAGCCGATT
GGCTGGGACG AAGCGTTCGC ACTGGCTGCC GAGAAATTGT GGGCGGTTCA GCAAGCCCAT
GGGCGCAATG CCGTGGCGGT CTACCAGGGC AACCCGAGCG TGCACAACTA CGGCTTGATG
ACCCACAGCA ACTACTTCTT GGGCCTGCTC AAGACCCGCA ACCGTTTCTC AGCCACGTCA
GTGGACCAGT TGCCGCAACA CCTGGTCAGC CACCTGATGT ATGGCCATGG TCTGCTGCTG
CCGATCCCGG ACATCGACCA TACCGACTTC ATGCTGATTC TTGGCGGCAA CCCGCTGGCC
TCCAATGGCA GCATCATGAC CGTGCCGGAC GTGGAAAAGC GTCTGAAGGC CCTGCGGGCG
CGTGGTGGGC GGCTGGTGGT GATTGACCCA CGGCGTAGCG AAACGGCGGC AATGGCTGAC
ACTCATCTGT TCATTCGCCC CGGTGGCGAT GCAGCCCTGT TGTGCGGCTT GCTGAACACC
CTGTTCGAAG AAGGCCTGGC GCGGGGGTCG CACTTACCGG TCAGCGGCCT GCAGCAGGTG
CGCGAGGCCA TTGCGCCGTT CAGTGCCGAG GCCGTGAGTG CCCACTGTGG TATTGCCGCA
GCCGACATAC GCCAGCTGGC AGGCGACCTC GCCGCTGCCG GGCGGGCAGT GTGCTACGGC
CGCATGGGCG TCTCGACCCA AGCCTTCGGC ACGCTCTGCC ACTGGCTGGT GCAACTGATC
AACCTGGTGA CCGGCAACCT CGACCGCACA GGCGGCGCGT TGTGTACGGA GCCTGCCGTC
GACCTGGTGG CGACCACCTC GGGTGGTCAT TTCAATGCCT GGCAGAGCCG TGTGTCGGGC
TTGCCCGAGT ACGGCGGTGA ATTGCCCGTG GCGGCCTTGG CCGAGGAAAT ACGCACGCCT
GGCGAAGGGC AGGTGCGCGC ATTAGTGACA GTTGCCGGTA ACCCCGTGTT GTCGACGCCT
AACGGCCGCC AGCTGGATGC GGCACTGGAT GGCCTGGAGT TCATGCTCAG CATCGATCTC
TACATCAATG AGACCACCCG CCATGCCGAT CTGATCCTGC CCTCCACCTC GGCGCTGGAA
AACGACCATT ACGACAGCAC CTTCAACCTT CTGGCCGTGC GTAACGTCAC CCGCTTCAAC
CGGGCGATCC TGCCCAAGCC GGAGGGGGCG CTGCATGATT GGGAGATCTT CGTCGGCCTG
GCGCAGGCGT TTGCCAGGCG TGCCGAACTG GAGTTGAAAC CCACCTGGGC GCCTGCGCAG
ATGATCGATC TGGCCCTGCG CAAAGGGCGC TATGGTGAAG CAACGCCTTG GCAGCTCTCT
CTGGAAACAC TGGGCAACCA TCCGCATGGG CTTGACCTTG GGCCGTTGCG CAGCAACCTT
GCTGTACGCC TGGCGACTGC CAGCAAAACT GTCGAAGCGG CGCCCCAGGT GTTGCTGGAT
GACTTGCACC GCCTGGCGCA AATGACGCCA CCTGTGCCGG GCGAACTGCT GCTGATCGGG
CGTCGCCATG TGCGCAGCAA CAACTCGTGG ATGCACAACT TCCATCGCCT GGTGAAGGGC
AAGCCACGCC ATCAGTTGTT GATGCACCCG CAAGACCTGC AGCAGCGCCA GCTGCAGGAC
GGCCAGCGGG TGCGTATCCG CTCGCGAACG GGTGAACTTG AAGTGGAGGT GCAGGCCTGC
GAGGACATGA TGCCCGGGGT CGTCAGCTTG CCCCATGGCT ATGGCCATGG CCGTCAGGGC
GTGCACATGC AAATCGCCCA GGCGCAACCG GGCGTGAGTG CCAATGACCT GACCGATGAG
CGCTTTCGCG ATCAGGTTTC CGGCAACGCT GCCCTCAATG GCGTGCCCGT GCAAGTAGAG
GCCGCGTAA
|
|---|
| Protein sequence | MTKTLHHRAC HLCEAICGLN IEVSHEDDGR ALISSIKGDP LDPFSRGHVC PKAVALQDIQ
NDPDRLRQPH KRVGEHWQPI GWDEAFALAA EKLWAVQQAH GRNAVAVYQG NPSVHNYGLM
THSNYFLGLL KTRNRFSATS VDQLPQHLVS HLMYGHGLLL PIPDIDHTDF MLILGGNPLA
SNGSIMTVPD VEKRLKALRA RGGRLVVIDP RRSETAAMAD THLFIRPGGD AALLCGLLNT
LFEEGLARGS HLPVSGLQQV REAIAPFSAE AVSAHCGIAA ADIRQLAGDL AAAGRAVCYG
RMGVSTQAFG TLCHWLVQLI NLVTGNLDRT GGALCTEPAV DLVATTSGGH FNAWQSRVSG
LPEYGGELPV AALAEEIRTP GEGQVRALVT VAGNPVLSTP NGRQLDAALD GLEFMLSIDL
YINETTRHAD LILPSTSALE NDHYDSTFNL LAVRNVTRFN RAILPKPEGA LHDWEIFVGL
AQAFARRAEL ELKPTWAPAQ MIDLALRKGR YGEATPWQLS LETLGNHPHG LDLGPLRSNL
AVRLATASKT VEAAPQVLLD DLHRLAQMTP PVPGELLLIG RRHVRSNNSW MHNFHRLVKG
KPRHQLLMHP QDLQQRQLQD GQRVRIRSRT GELEVEVQAC EDMMPGVVSL PHGYGHGRQG
VHMQIAQAQP GVSANDLTDE RFRDQVSGNA ALNGVPVQVE AA
|
|---|
| |