Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_4309 |
Symbol | |
ID | 5872116 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 4822280 |
End bp | 4824730 |
Gene Length | 2451 bp |
Protein Length | 816 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641549443 |
Product | DEAD/DEAH box helicase domain-containing protein |
Protein accession | YP_001670533 |
Protein GI | 167035302 |
COG category | [R] General function prediction only |
COG ID | [COG1201] Lhr-like helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.638833 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCGCCG CCATCGACCT TGCCAATGCC TGGTTCGCCA AACGCGGCTG GAAGCCGTTC GCTTTCCAGC GACGCGTCTG GGCAGCCGTC GAGCGCGGCC AGTCTGGCCT ATTGCATGCC AGTACCGGCG CCGGCAAGAC CTACGCCGTG TGGCTCGCCG CGCTTCGCGC GTTCAAGCCC CAGCCCCAAG GCAGCCAACC GGTGCCATTG CAGGTGCTGT GGGTCACGCC CATGCGGGCC TTGGCCGCTG ACACTGCGCG CGCCTTGCAG GCGCCACTGG ATGAACTTGA ACTGCCTTGG CGCGTGGGGG TGCGCAGCGG CGACACCGGC AGCGCCGAAC GCGCCCGGCA AGCGCGGCGC CTGCCAAGCG TGCTGGTCAC CACACCCGAA AGCCTGACCT TGCTGCTGAT CCGGGCACAG GCGCGCGAAG ACTTCGCTAC GCTGCGCCTG GTGGTGGTGG ATGAATGGCA CGAACTGCTG GGCAACAAAC GCGGGGTACA ACTGCAACTG GCCCTGGCCC ACCTGCGCCA GTGGCACCCC GACCTGCCCA CTTGGGGCCT CTCGGCCACC CTCGGCAACC TGCAACATGC GCTGGAGGTA CTGCTGCCGC AAGGCGGCCT GCTGGTACAG GGCCGCCAGG ACAAGGCGCT ACAGGTCGAT ACCTTGCTGC CAACAGCCAT CGAGCGCTTC CCCTGGGCGG GGCACATGGG CCTGAAGATG CTCGACCAGG TCAGCCACGA GATCGACGCC AGTGCCAGCT GCTTGGTGTT CACCAACACC CGTGCACAGG CCGAACTTTG GTACCAGGCC CTGCTTGAAG CCCGCCCCGA CTGGGCCGGG CTGATTGCCT TGCACCATGC CTCACTGGCC CGAGAAACCC GCGACTGGGT CGAGCGCAGC CTCAAGCAAG GCAGCCTGAA AGCCGTGGTC TGTACTTCCA GCCTGGACCT GGGTGTGGAC TTTCTGCCAG TGGAGCGGGT GTTGCAGATT GGCTCGGCCA AGGGCATTGC CCGCCTGATG CAGCGTGCCG GGCGCTCAGG GCATGCGCCG GAACGGCGCT CGCGGGTCAC CCTGGTGCCT ACCCACAGCC TGGAGCTGGT GGAGGCAGCG GCGGCCCGCA AGGCACTGCT TGCCGGTCAC ATCGAAGCCC GCTTCTCACC ACGCCTGAGC ATGGACGTGC TGGTCCAGCA CCTGGTCAGC ATGGCCCTGG GCAGTGGCTT CCGTCCCGAG CAACTGCTGG CTGAAGTGCG CAGCACCTGG GCCTTTCGCG AGTTGCGCGA CAGCCAGTGG CAATGGGCGC TGGACTTCGT CTGTCATGGC GGCAACTCGC TCAGCGCCTA CCCGGACTAC CAGCGCGTCG AGCGCCACGC CGACGGTGTT TACCGGGTCG CCAGCGAACG TCTGGCACGA CGCCATCGCA TGGGTATCGG CACCATCGTC AGCGACGCCA ACCTGCAACT CAAATACTGG GGCAAGGGTA GCGCGGGCAA GACGCTTGGT AGTGTCGAGG AAGCCTTCAT TGCCCGCCTG CGCCCCGGCG ACGCGCTGGT GTTTGCCGGG CGGGTGCTGG AGCTGGTGCG CGTGGAAAAC ATGACGGCCT ATGTGCGTCG CAGCACGGCG CGCAAGGCTG CGGTGGCGCG TTGGAATGGC GGGCGCATGC CGCTCTCGAG CGAATTGGCC GACGCGCTGG TCGAACAGCT CGATGCTGCA GCCCATGAAC GCTTTGATGG CCCGGAGATG CGCGCAGTGC GCCCGCTGCT GGCGCTGCAG GCACGATGGT CGGCCTTGCC CACCACCGGC ACACTGCTGG CCGAGACCTT CAAGTCACGC CAGGGCTGGC ATCTGTTCCT GTACCCCTTT GCCGGGCGCA TGGCCAACCT GGGCCTGGCC AACCTGATTG CCTGGCGGGT CAGCCGCGTG CAACCGCTAT CGGTATCGAT TGCCGTCAAT GACTATGGGT TCGAACTGCT CAGCCCTGCC CTAGTGGACT GGGCGAGTTA CTTGCCGCTG GCGCTGAGCA CCGATCACCT GCTGGAAGAT GTGCTGGCCA GCCTGAATGC CGGGGAAATG GCTCTGCGGC GCTTTCGTGA GATTGCCCAG ATCGCCGGGC TGGTGTTTGG CGGCTACCCA GCGGCGCAGA AGAGCACCCG GCAGATCCAG GCTTCCAGTG GGCTGTTCTA TGAAGTGTTT CGCAAACACG ATACAGGGAA CCTGCTGCTT GGCCAGGCGC AGGATGAGGT GTTGAGCGAG GAGCTGGAGA TCGAACGACT GCGTCGGCAG TTGCTGAAAA TGGGTGAGTT GCGACTGGAC CTGCGCGCGT TGAGGCGGCC AGGGCCGCTG GCGTTTGCGT TGTTGGTGGA AGGCATGCGC GAGACGTTAA GCACCGAGAA GCTGGCGGAT CGGATTGCGC GCATGGTGGC GGAACTGGAA CAAGCGGCGG GTGGCGGATG A
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Protein sequence | MPAAIDLANA WFAKRGWKPF AFQRRVWAAV ERGQSGLLHA STGAGKTYAV WLAALRAFKP QPQGSQPVPL QVLWVTPMRA LAADTARALQ APLDELELPW RVGVRSGDTG SAERARQARR LPSVLVTTPE SLTLLLIRAQ AREDFATLRL VVVDEWHELL GNKRGVQLQL ALAHLRQWHP DLPTWGLSAT LGNLQHALEV LLPQGGLLVQ GRQDKALQVD TLLPTAIERF PWAGHMGLKM LDQVSHEIDA SASCLVFTNT RAQAELWYQA LLEARPDWAG LIALHHASLA RETRDWVERS LKQGSLKAVV CTSSLDLGVD FLPVERVLQI GSAKGIARLM QRAGRSGHAP ERRSRVTLVP THSLELVEAA AARKALLAGH IEARFSPRLS MDVLVQHLVS MALGSGFRPE QLLAEVRSTW AFRELRDSQW QWALDFVCHG GNSLSAYPDY QRVERHADGV YRVASERLAR RHRMGIGTIV SDANLQLKYW GKGSAGKTLG SVEEAFIARL RPGDALVFAG RVLELVRVEN MTAYVRRSTA RKAAVARWNG GRMPLSSELA DALVEQLDAA AHERFDGPEM RAVRPLLALQ ARWSALPTTG TLLAETFKSR QGWHLFLYPF AGRMANLGLA NLIAWRVSRV QPLSVSIAVN DYGFELLSPA LVDWASYLPL ALSTDHLLED VLASLNAGEM ALRRFREIAQ IAGLVFGGYP AAQKSTRQIQ ASSGLFYEVF RKHDTGNLLL GQAQDEVLSE ELEIERLRRQ LLKMGELRLD LRALRRPGPL AFALLVEGMR ETLSTEKLAD RIARMVAELE QAAGGG
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