Gene PputGB1_4309 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_4309 
Symbol 
ID5872116 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp4822280 
End bp4824730 
Gene Length2451 bp 
Protein Length816 aa 
Translation table11 
GC content66% 
IMG OID641549443 
ProductDEAD/DEAH box helicase domain-containing protein 
Protein accessionYP_001670533 
Protein GI167035302 
COG category[R] General function prediction only 
COG ID[COG1201] Lhr-like helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.638833 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGCCG CCATCGACCT TGCCAATGCC TGGTTCGCCA AACGCGGCTG GAAGCCGTTC 
GCTTTCCAGC GACGCGTCTG GGCAGCCGTC GAGCGCGGCC AGTCTGGCCT ATTGCATGCC
AGTACCGGCG CCGGCAAGAC CTACGCCGTG TGGCTCGCCG CGCTTCGCGC GTTCAAGCCC
CAGCCCCAAG GCAGCCAACC GGTGCCATTG CAGGTGCTGT GGGTCACGCC CATGCGGGCC
TTGGCCGCTG ACACTGCGCG CGCCTTGCAG GCGCCACTGG ATGAACTTGA ACTGCCTTGG
CGCGTGGGGG TGCGCAGCGG CGACACCGGC AGCGCCGAAC GCGCCCGGCA AGCGCGGCGC
CTGCCAAGCG TGCTGGTCAC CACACCCGAA AGCCTGACCT TGCTGCTGAT CCGGGCACAG
GCGCGCGAAG ACTTCGCTAC GCTGCGCCTG GTGGTGGTGG ATGAATGGCA CGAACTGCTG
GGCAACAAAC GCGGGGTACA ACTGCAACTG GCCCTGGCCC ACCTGCGCCA GTGGCACCCC
GACCTGCCCA CTTGGGGCCT CTCGGCCACC CTCGGCAACC TGCAACATGC GCTGGAGGTA
CTGCTGCCGC AAGGCGGCCT GCTGGTACAG GGCCGCCAGG ACAAGGCGCT ACAGGTCGAT
ACCTTGCTGC CAACAGCCAT CGAGCGCTTC CCCTGGGCGG GGCACATGGG CCTGAAGATG
CTCGACCAGG TCAGCCACGA GATCGACGCC AGTGCCAGCT GCTTGGTGTT CACCAACACC
CGTGCACAGG CCGAACTTTG GTACCAGGCC CTGCTTGAAG CCCGCCCCGA CTGGGCCGGG
CTGATTGCCT TGCACCATGC CTCACTGGCC CGAGAAACCC GCGACTGGGT CGAGCGCAGC
CTCAAGCAAG GCAGCCTGAA AGCCGTGGTC TGTACTTCCA GCCTGGACCT GGGTGTGGAC
TTTCTGCCAG TGGAGCGGGT GTTGCAGATT GGCTCGGCCA AGGGCATTGC CCGCCTGATG
CAGCGTGCCG GGCGCTCAGG GCATGCGCCG GAACGGCGCT CGCGGGTCAC CCTGGTGCCT
ACCCACAGCC TGGAGCTGGT GGAGGCAGCG GCGGCCCGCA AGGCACTGCT TGCCGGTCAC
ATCGAAGCCC GCTTCTCACC ACGCCTGAGC ATGGACGTGC TGGTCCAGCA CCTGGTCAGC
ATGGCCCTGG GCAGTGGCTT CCGTCCCGAG CAACTGCTGG CTGAAGTGCG CAGCACCTGG
GCCTTTCGCG AGTTGCGCGA CAGCCAGTGG CAATGGGCGC TGGACTTCGT CTGTCATGGC
GGCAACTCGC TCAGCGCCTA CCCGGACTAC CAGCGCGTCG AGCGCCACGC CGACGGTGTT
TACCGGGTCG CCAGCGAACG TCTGGCACGA CGCCATCGCA TGGGTATCGG CACCATCGTC
AGCGACGCCA ACCTGCAACT CAAATACTGG GGCAAGGGTA GCGCGGGCAA GACGCTTGGT
AGTGTCGAGG AAGCCTTCAT TGCCCGCCTG CGCCCCGGCG ACGCGCTGGT GTTTGCCGGG
CGGGTGCTGG AGCTGGTGCG CGTGGAAAAC ATGACGGCCT ATGTGCGTCG CAGCACGGCG
CGCAAGGCTG CGGTGGCGCG TTGGAATGGC GGGCGCATGC CGCTCTCGAG CGAATTGGCC
GACGCGCTGG TCGAACAGCT CGATGCTGCA GCCCATGAAC GCTTTGATGG CCCGGAGATG
CGCGCAGTGC GCCCGCTGCT GGCGCTGCAG GCACGATGGT CGGCCTTGCC CACCACCGGC
ACACTGCTGG CCGAGACCTT CAAGTCACGC CAGGGCTGGC ATCTGTTCCT GTACCCCTTT
GCCGGGCGCA TGGCCAACCT GGGCCTGGCC AACCTGATTG CCTGGCGGGT CAGCCGCGTG
CAACCGCTAT CGGTATCGAT TGCCGTCAAT GACTATGGGT TCGAACTGCT CAGCCCTGCC
CTAGTGGACT GGGCGAGTTA CTTGCCGCTG GCGCTGAGCA CCGATCACCT GCTGGAAGAT
GTGCTGGCCA GCCTGAATGC CGGGGAAATG GCTCTGCGGC GCTTTCGTGA GATTGCCCAG
ATCGCCGGGC TGGTGTTTGG CGGCTACCCA GCGGCGCAGA AGAGCACCCG GCAGATCCAG
GCTTCCAGTG GGCTGTTCTA TGAAGTGTTT CGCAAACACG ATACAGGGAA CCTGCTGCTT
GGCCAGGCGC AGGATGAGGT GTTGAGCGAG GAGCTGGAGA TCGAACGACT GCGTCGGCAG
TTGCTGAAAA TGGGTGAGTT GCGACTGGAC CTGCGCGCGT TGAGGCGGCC AGGGCCGCTG
GCGTTTGCGT TGTTGGTGGA AGGCATGCGC GAGACGTTAA GCACCGAGAA GCTGGCGGAT
CGGATTGCGC GCATGGTGGC GGAACTGGAA CAAGCGGCGG GTGGCGGATG A
 
Protein sequence
MPAAIDLANA WFAKRGWKPF AFQRRVWAAV ERGQSGLLHA STGAGKTYAV WLAALRAFKP 
QPQGSQPVPL QVLWVTPMRA LAADTARALQ APLDELELPW RVGVRSGDTG SAERARQARR
LPSVLVTTPE SLTLLLIRAQ AREDFATLRL VVVDEWHELL GNKRGVQLQL ALAHLRQWHP
DLPTWGLSAT LGNLQHALEV LLPQGGLLVQ GRQDKALQVD TLLPTAIERF PWAGHMGLKM
LDQVSHEIDA SASCLVFTNT RAQAELWYQA LLEARPDWAG LIALHHASLA RETRDWVERS
LKQGSLKAVV CTSSLDLGVD FLPVERVLQI GSAKGIARLM QRAGRSGHAP ERRSRVTLVP
THSLELVEAA AARKALLAGH IEARFSPRLS MDVLVQHLVS MALGSGFRPE QLLAEVRSTW
AFRELRDSQW QWALDFVCHG GNSLSAYPDY QRVERHADGV YRVASERLAR RHRMGIGTIV
SDANLQLKYW GKGSAGKTLG SVEEAFIARL RPGDALVFAG RVLELVRVEN MTAYVRRSTA
RKAAVARWNG GRMPLSSELA DALVEQLDAA AHERFDGPEM RAVRPLLALQ ARWSALPTTG
TLLAETFKSR QGWHLFLYPF AGRMANLGLA NLIAWRVSRV QPLSVSIAVN DYGFELLSPA
LVDWASYLPL ALSTDHLLED VLASLNAGEM ALRRFREIAQ IAGLVFGGYP AAQKSTRQIQ
ASSGLFYEVF RKHDTGNLLL GQAQDEVLSE ELEIERLRRQ LLKMGELRLD LRALRRPGPL
AFALLVEGMR ETLSTEKLAD RIARMVAELE QAAGGG