| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4273 |
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| Symbol | |
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| ID | 5872080 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 4784120 |
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| End bp | 4786384 |
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| Gene Length | 2265 bp |
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| Protein Length | 754 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641549407 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001670497 |
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| Protein GI | 167035266 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3300] MHYT domain (predicted integral membrane sensor domain)
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATGGC TGGGGCTGCA ACTGTTCGCT GATCTTCCGG CAACCGGGCG CATCGTCATC
GATTGCCGGC ATGAACCGTT ACTGGTTCTA CTCGCCTACT TCGTCGCCAG CGCGTCCTGC
TTCGCTACCC TCGACATGGC CGAACGCCAG TCACACAGCG ACGACCCCAC CGCACACCGG
CAATGGAACA TGCTCGGCGC CTGCTGCCTG GCCGGCGGCA TCTGGGCCAT GCACTTCATC
AGCATGCTGG CCTTCCAGGC CCCGGTGGAA GTGCACTATG ACGTCTCGCT GACCATCCTC
TCGCTGCTCA TTGCCCTGGG TGTCGCCTGG CTGGCCATGC ACAGCCTCGA ACGCAGCCAG
ATGCGCGCGT ATCACTTTGT GCTTAGCGCT GCGCTGATTG GCCTGGGCAT CATCCTGATG
CATTTTGTCG GCATGGCCGC AATGGAAACC GGCGCCGTCC AGTACTACCA GACCGGCCTG
CTGCTGGCCT CTGCCGCCAT CGCCCTGCTC ACGAGCCTGG CCGCGTTGTG CCTGGCTCGC
TATTTGCGCA ATGGCAGCGG CACCCTGTAC CAGGCCATGA AGTACGGCGC CAGCCTGCTG
CTGGCAGGCG GTATCGTTAC CACCCATTTC ACCGCGATGT CAGCCATGAC CCTGGTCATC
CCGGCCGATA CCGCACTGCG TCTGCCGTCT GGCGACAACA GCCTGCAACT GGCGCTGGGC
ATTGGCTTCA TCACCCTGCT GATCAGTGGC GCCAGCATCA GCGCCGCGCT GGCCGACAAG
AAGCTGCAGA GCAAAGAGCA CGATCTGCGT CGGGTCAGCG TGCTGCTCAG CCAACTGGAC
CAAGCCCGCG CGTCACTGCA GCAGGCCGCG CATTACGATG CCCTGACCAA CCTGGTCAAT
CGCCGTGGTT TCAACCAGGT GTTCGCCGAA CGCCTGGTCG AACACCAGGC CAACGAAAAC
CGCCTGGCGG TGATGTTCCT CGACATCGAC CATTTCAAGC GCATCAACGA CAGCCTCGGC
CACGACGCCG GTGACGAGCT GCTCAAGGTG ATCGCCAACC ACATCAAGGC CGCTACCCGC
AGCCAAGACC TGGTTGCGCG CTTGGGTGGC GACGAGTTCT GTGTGGTCAC CAGCCTCAAC
AGCCGCGACG AAGCCCGTCA CCTGGCCCAG CGCATCATGC AACGAATGAA AGACCCCATC
GACCTGGGCG GCCGGCGCAT GGTCATGACC ACCAGCATTG GCGTGAGCAT CTTCCCGGAC
GACGGCAGCA CAGCCGAAGA GTTGCTCAAG CACGCCGACC TGGCCCTCTA TCAATCCAAG
GACAACGGCC GCAACAGCCT GAACTTCTTC AACGACAGCC TGAAGGCCAG GGCTTCGATT
GCACTGCAAC TGGAAGAAGA GCTGAGACTG GCCCTGTTGG AAGAGCGCGG GTTGTGCGTG
CACTACCAGC CCATCTTCGA CCTGCGCAGC GGGCAAGTGG CCAAACTGGA AGCGCTGCTG
CGCTGGCAGC ACCCGCAACA CGGCCTGCTG GGGCCCGACC GTTTCATCGG CATTGCCGAA
GCCAACGGCC TGATCATCGA CCTCGACTTG TGGGTATTGC GCCACGCCTG CGCCGACCTG
GCCTACTTGC AGCGCCACGG CTACGGCGAA CTCAAGGTCA CGGTCAACTG CTCGGCAGTC
ACCCTCAGCC ACGACGAACT GCCCAACGAA GTTGAAAAGG CGCTGTTCCA TGCCGCCCTG
GCGCCGCGCC AACTTGAGCT GGAGGTGACC GAGAACGCAC TGATGGGCGA TATCCAGCGT
ACGGTCAGCC TGCTCAAGCG CGTGCGCGCC CTGGGCGTGG CGCTGTCGAT CGATGACTTT
GGCACTGGCT ACTCGTCACT GGCCTACCTC AAGCGCCTGC CACTGGACGT GCTGAAAATC
GACCGCACCT TCCTGCAGGA TGTGCCGGGC AGCCAGAAAG ACCGCGAAAT CGTCCAGGCG
ATCATCATCA TGGCGCATAC CCTGCACTTG CAGGTCGTCA GCGAGGGCGT GGAAACCGCC
GAACAACAGG CCTTCCTGGA AAGCCACGGT TGCGACTACC TGCAGGGCTA CCTGCTGGGG
CGCCCCGTGC CGCTGGCAGA GCTGCGGCCG CTGCTGGAGC GGCTACAGCG CCAGAACGGC
GTACTCACGC CTTGTTGCGG TACAGCTCCA CCAGGGTCGC CGGGTCTTTT TGCAGGTAAC
CCTGGCTACC GTGCAGGCGC ATCAATTGCG CGGCGAGGCC GCTGA
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| Protein sequence | MEWLGLQLFA DLPATGRIVI DCRHEPLLVL LAYFVASASC FATLDMAERQ SHSDDPTAHR
QWNMLGACCL AGGIWAMHFI SMLAFQAPVE VHYDVSLTIL SLLIALGVAW LAMHSLERSQ
MRAYHFVLSA ALIGLGIILM HFVGMAAMET GAVQYYQTGL LLASAAIALL TSLAALCLAR
YLRNGSGTLY QAMKYGASLL LAGGIVTTHF TAMSAMTLVI PADTALRLPS GDNSLQLALG
IGFITLLISG ASISAALADK KLQSKEHDLR RVSVLLSQLD QARASLQQAA HYDALTNLVN
RRGFNQVFAE RLVEHQANEN RLAVMFLDID HFKRINDSLG HDAGDELLKV IANHIKAATR
SQDLVARLGG DEFCVVTSLN SRDEARHLAQ RIMQRMKDPI DLGGRRMVMT TSIGVSIFPD
DGSTAEELLK HADLALYQSK DNGRNSLNFF NDSLKARASI ALQLEEELRL ALLEERGLCV
HYQPIFDLRS GQVAKLEALL RWQHPQHGLL GPDRFIGIAE ANGLIIDLDL WVLRHACADL
AYLQRHGYGE LKVTVNCSAV TLSHDELPNE VEKALFHAAL APRQLELEVT ENALMGDIQR
TVSLLKRVRA LGVALSIDDF GTGYSSLAYL KRLPLDVLKI DRTFLQDVPG SQKDREIVQA
IIIMAHTLHL QVVSEGVETA EQQAFLESHG CDYLQGYLLG RPVPLAELRP LLERLQRQNG
VLTPCCGTAP PGSPGLFAGN PGYRAGASIA RRGR
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