| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4249 |
|---|
| Symbol | |
|---|
| ID | 5872053 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 4752708 |
|---|
| End bp | 4754744 |
|---|
| Gene Length | 2037 bp |
|---|
| Protein Length | 678 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641549380 |
|---|
| Product | oxidoreductase FAD-binding subunit |
|---|
| Protein accession | YP_001670473 |
|---|
| Protein GI | 167035242 |
|---|
| COG category | [C] Energy production and conversion
[R] General function prediction only |
|---|
| COG ID | [COG0633] Ferredoxin
[COG1018] Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
[COG3576] Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACAGC CCCCGGACCA TCGCCCCTCG CCCTGGCATG CGGGCGAGAA GACCCTGCAG
GAAAAGGTCG GTGTAGCAGA GCGCATGGAG GCGTTCGGGC AAAAGGTCAT TCGTGACTAC
ATGCCCGACC AGCACCGTAC TTTCTATCAT CAGTTACCTT TCATGATCGC CGCCAGCGTG
GATACCCTGG GTCGGCCGTG GGCCACCCTG CTGGAGGGGC CAGAAGGGTT TGTCAGCTCG
CCCGACCCTC GCCTGCTGAC CATCGATACC ACGTTGCCAG CGGACGACCC CGCCACCCCT
GGGCTGGCAG CAGGAGAGGC GGTCGGCCTG TTGGGTATCG AGTTGCACAC CCGTCGGCGC
AATCGCATCA ATGGGCAAAT CCGTCAGGCT GCACAAGGGC AACTGCAGGT GGCCGTGGAG
CAGTCGTTCG GCAACTGCCC GCAGTACATT CAGTTGCGTG ATTACACCCG TGTCGACCAA
CCCCCGCAGG GGCGCGTTGA CGCCCCAGCA CTGGATGCCA CGACTGCCAG CATGATCGAG
GGCGCCGATA CCTTCTTTGT CGCCAGCTAT GTCGAGCACG GCAATGGCCA GCGCTCGGTG
GATGTCTCCC ATCGGGGTGG TCGGCCAGGG TTCATCAAGG TCGAAGGCAG CCTTCTGACC
ATTCCCGACT ACGCTGGCAA CCTGCACTTC AACACCTTGG GCAATTTGCT GGTCAACCCG
CAGGCAGGCT TGCTGTTCAT CGATTTCAGT AACGGTAATG TTCTGCAGGT ATGCGGGCGT
GCCGAGGTGC TGCTGGACAG CCCTGCCATC CAGGCTTTTG AAGGTGCCGA GCGGTTATGG
ACGCTGCAGG TCGAGCAGGT GGTGTGGCGC CCGGCTGCGG TCTCACTGCG CTGGGCTTTC
AAGGCGTACG CACCGACCAG CCTGATGACG GGTACCTGGG CCGAGGCCGA CGCGCGCCTG
GAGCAACGCC GGCAACAGCG CCAATGGCAA GCCTGGCGTG TGCTGCGGGT GGAGCAGGAA
AGCCGTGATA TCCGCTCGTT CTACCTTGAG CCACCGGCCG GTAGCCGTGT GGCCTTCGCG
CCAGGCCAGC ATCTTCCTGT GCAAGTGCAG CGTGATTGCG AGGCTGCGCT GATCCGCACC
TACAGCCTGT CCAGTGCACC CGCTGATGGC TACCTGCGCA TCAGCGTCAA GGCCCAGGGC
CCGGCCTCGC GCTATTTGCA CGAGCGCATC GTGGCGGGTG ATGTGTTGAA CGTGCGCCCA
CCGATGGGCA GCTTTACGCT CGACCAGCAA AGCACACGGC CGCTGGTGCT GATTGGTGCA
GGTGTGGGTA TTACGCCCTT GCTGGCCATG CTGCGTGAGC AGGTGAGCAC GGGGCAGGCC
CGGCGAATTC ATTTGTTTCA TGGCGCGCGC AGCCTGGCCG AATTGCCGTT TCAGCAGGAG
CTGGCGAGTT TGCAGCAGCA GGCCGCTGGG TTGTTGCGCG TGCACCGTGC CCTCAGCCAA
CCGGAAGGGC ATGCGCGGGT CGGTCGCGAT TTCGAGTTTA TCGGGCGATT GGGCATCGAG
CAGGTCAAGG CGACGCTGGC GCTGGACGAC TATGACTTCT ACCTGTGCGG CCCAGGCAGC
TTTACCCAGG CATTGTATGA AGGGCTGCGC GGGGTGCATG TGCCGGATGC GCGGATTCAC
GCCGAGGCCT TTGGCCCGTC GACGCTGCGC CGGCACACGG ATGACGGGCG GCCCACCGTG
CAACAGCTAC CCGCTGCCAA CGAGCCGGTG CCGGTGTATT TTGCGGCTTC GGCGAAGGAG
GCACGCTGGA CGCCCGGTAG CGGTACGTTA TTGGAGTTGG CCGAGGCGCG TGGGTTGGCG
CCAGAGTTCA GTTGCCGGGG CGGCTCGTGC GGCACCTGCA AGACCAAGCT CGTCAGTGGC
CAGGTGCATT ACCCGAACCT ACCGGCAGAG CTGCCGGAGT CGGGTTCGGT ACTGATCTGT
TGTGCTGTGC CGGCACATCA GGAAGAGGGC GCACAGGCCC TGGTGCTGGA AATCTGA
|
|---|
| Protein sequence | MQQPPDHRPS PWHAGEKTLQ EKVGVAERME AFGQKVIRDY MPDQHRTFYH QLPFMIAASV
DTLGRPWATL LEGPEGFVSS PDPRLLTIDT TLPADDPATP GLAAGEAVGL LGIELHTRRR
NRINGQIRQA AQGQLQVAVE QSFGNCPQYI QLRDYTRVDQ PPQGRVDAPA LDATTASMIE
GADTFFVASY VEHGNGQRSV DVSHRGGRPG FIKVEGSLLT IPDYAGNLHF NTLGNLLVNP
QAGLLFIDFS NGNVLQVCGR AEVLLDSPAI QAFEGAERLW TLQVEQVVWR PAAVSLRWAF
KAYAPTSLMT GTWAEADARL EQRRQQRQWQ AWRVLRVEQE SRDIRSFYLE PPAGSRVAFA
PGQHLPVQVQ RDCEAALIRT YSLSSAPADG YLRISVKAQG PASRYLHERI VAGDVLNVRP
PMGSFTLDQQ STRPLVLIGA GVGITPLLAM LREQVSTGQA RRIHLFHGAR SLAELPFQQE
LASLQQQAAG LLRVHRALSQ PEGHARVGRD FEFIGRLGIE QVKATLALDD YDFYLCGPGS
FTQALYEGLR GVHVPDARIH AEAFGPSTLR RHTDDGRPTV QQLPAANEPV PVYFAASAKE
ARWTPGSGTL LELAEARGLA PEFSCRGGSC GTCKTKLVSG QVHYPNLPAE LPESGSVLIC
CAVPAHQEEG AQALVLEI
|
|---|
| |