| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4242 |
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| Symbol | |
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| ID | 5872046 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 4745514 |
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| End bp | 4746485 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641549373 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_001670466 |
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| Protein GI | 167035235 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.271244 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGTTCA AACGCAAGCT GCTCCTTGCC GTACTCCCCT TCGCCTTCAG CGTCGCCACA
CCCGCCTCGG CACTGGACAT CAAGTTCGCC GAAATTCACC CGGCCGGCTA CCCGACCGTG
GTCGCCGAGC AAAACATGGG TAAAAAGCTG GAAGAAGCCA GCAACGGCGA CATCACCTTC
AAGATGTTCG CCGGCGGCGT GCTGGGCTCG GAGAAGGAAG TGATCGAACA GGCGCAGATC
GGCGCCGTGC AGATGACCCG CGTCAGCCTG GGGATCGTCG GCCCGGTGGT GCCGGATGTA
AACGTGTTCA ACATGCCGTT CGTGTTCCGC GACCATGAGC ACATGCGCAA GATCATCGAC
GGCGAGATCG GCCAGGAGAT CCTCGACAAG ATCACCAACT CCGATTTCAA CCTGGTGGCC
CTGGCCTGGA TGGATGGCGG CTCGCGCAGC ATCTACACGA AAAAACCGGT ACGCAGCCTG
GAAGACCTCA AGGGCATGAA GATTCGCGTA CAGGGCAACC CGCTGTTCAT CGACATGATG
AACGCCATGG GCGGCAACGG TATCGCCATG GACACCGGGG AAATTTTCAG CGCCCTGCAG
ACCGGCGTGA TCGATGGTGC CGAGAACAAC CCGCCCACGC TGCTCGAGCA CAACCACTAC
CAGAGCGCCA AGTACTACAC CTTGACCGGG CACCTGATTC TGCCGGAGCC GGTGGTAATG
TCCAAAACCA CCTGGAACAA ACTCAGCCCC GAGCAGCAAG CACTGGTGAA GAAGGTCGCG
CGTGAAGCGC AGATGGAAGA ACGCGCACTG TGGGATGCCA AGTCCGCCGC CAGCGAAGAG
AAGCTCAAGG CCGCCGGTGT CGAGTTCATC ACCGTGGACA AGAAGCCATT CTACGACGCC
ACTGCCTCGG TACGCGAAAA ATACGGCGCG CAGTACGCCG ACCTGATGAA GCGCATCGAC
GCCGTCCAGT AA
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| Protein sequence | MTFKRKLLLA VLPFAFSVAT PASALDIKFA EIHPAGYPTV VAEQNMGKKL EEASNGDITF
KMFAGGVLGS EKEVIEQAQI GAVQMTRVSL GIVGPVVPDV NVFNMPFVFR DHEHMRKIID
GEIGQEILDK ITNSDFNLVA LAWMDGGSRS IYTKKPVRSL EDLKGMKIRV QGNPLFIDMM
NAMGGNGIAM DTGEIFSALQ TGVIDGAENN PPTLLEHNHY QSAKYYTLTG HLILPEPVVM
SKTTWNKLSP EQQALVKKVA REAQMEERAL WDAKSAASEE KLKAAGVEFI TVDKKPFYDA
TASVREKYGA QYADLMKRID AVQ
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