| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4205 |
|---|
| Symbol | aspS |
|---|
| ID | 5872006 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 4701691 |
|---|
| End bp | 4703466 |
|---|
| Gene Length | 1776 bp |
|---|
| Protein Length | 591 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641549333 |
|---|
| Product | aspartyl-tRNA synthetase |
|---|
| Protein accession | YP_001670429 |
|---|
| Protein GI | 167035198 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0173] Aspartyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00459] aspartyl-tRNA synthetase, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.103347 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCGCA GCCATTATTG CGGCCAACTG AACGAGAGCC TGGACGGCCA GGAAGTCACC
CTTTGCGGCT GGGTCCATCG TCGCCGCGAC CACGGCGGGG TGATCTTCCT CGACATCCGT
GACCGCGAAG GCATGGCCCA GGTCGTGTTC GACCCGGATC GCGCCGAAAC CTTCGCCGCT
GCCGACCGTG TGCGCAGCGA ATACGTCGTG CAGATCACCG GCAAGGTCCG CAAGCGCCCT
GACGGTGCGG TGAATGCCAA CATGGCGTCC GGTGCAATCG AGATCCTCGG CTACCAGCTG
AACGTGCTCA ACGAAGCAGA AACCCCGCCG TTCCCGCTGA ACGAATACTC CGACGTCGGC
GAGGAAACCC GCCTGCGTTA CCGCTTCATC GATCTGCGTC GCCCGGAAAT GGCTGACAAG
CTGCGCCTGC GCTCGCGCAT CACCAGCAGC ATTCGTCGCT TCCTCGACGA AAATGGTTTC
CTCGACGTCG AAACCCCGAT CCTCACCCGT GCTACCCCGG AAGGTGCGCG TGACTACCTG
GTGCCAAGCC GTACCCACGC CGGTAGCTTC TTCGCTCTGC CGCAGTCGCC ACAGCTGTTC
AAGCAGCTGC TGATGGTCGC CGGTTTCGAC CGCTACTACC AGATCGCCAA GTGCTTCCGT
GACGAAGACC TGCGGGCCGA CCGCCAGCCG GAATTCACCC AGATCGACAT CGAGACCAGC
TTCCTCGATG AAAGCGAGAT CATGGGCTTG ACCGAAAGCA TGATCCGCAA GCTGTTCAAG
GAAGTGCTGG ACCTGGAGTT CGGCGAATTC CCGCACATGA CCTTCGAAGA GGCCATGCGC
CGCTATGGCT CCGACAAGCC AGACCTGCGT AACCCGCTGG AACTGGTCGA CGTTGCCGAC
CAGTTGAAGG ATGTCGACTT CAAAGTATTC GCCGGCCCGG CCAACGATCC GAAGTGCCGT
GTTACCGCCC TGCGTCTGCC AGGCGGTGCG AGCATGCCGC GCAGCAAGAT CGACGAGTAC
ACCAAGTTCG TCGGCATTTA CGGTGCCAAG GGCCTGGCCT ACATCAAGGT CAACGAGCGT
GCCAAGGGCG TCGAAGGCCT GCAGTCGCCG ATCGTCAAGA ACATCCCCGA AGCCAACCTC
AACAACATCC TCGACCGCGT GGGTGCTGTA GATGGCGACA TCGTGTTCTT CGGCGCCGAC
AAGTTCAAGG TGGTCAGCGA AGCCCTGGGC GCGCTGCGTA TCCGCCTGGG TCACGACTTC
GAGCTGCTGA CCTGCGAGTG GGCACCGATG TGGGTCGTCG ACTTCCCGAT GTTCGAAGAG
AACGAAGACG GTAGCTTCAC CGCGCTGCAC CACCCGTTCA CCGCGCCCAA GTGCACCCCG
GAAGAGCTGG AGGCCAACCC GGCCACGGCC CTGTCCCGTG CCTACGACAT GGTCCTGAAC
GGCACCGAGC TGGGTGGCGG CTCGATCCGT ATTCACCGTA AAGAGATGCA ACAGGCGGTA
TTCCGCCTGC TGGGTATCGA GGCAGAAGAA CAGGAAGAGA AGTTCGGCTT CCTGCTCGAC
GCCCTGAAAT TCGGCGCACC GCCCCACGGC GGCCTGGCCT TCGGCCTGGA CCGCCTGGTC
ATGCTGATGA CCGGCGCCCA GTCGATCCGT GAAGTGATCG CGTTCCCGAA AACCCAGAGC
GCTGCATGCG TCATGACCCA GGCCCCTGGC CTGGTCGACG CCAAGGCCCT GCGCGAGCTG
CACATCCGAC TGCGCGAACA GACCAAGGTC GAGTAA
|
|---|
| Protein sequence | MMRSHYCGQL NESLDGQEVT LCGWVHRRRD HGGVIFLDIR DREGMAQVVF DPDRAETFAA
ADRVRSEYVV QITGKVRKRP DGAVNANMAS GAIEILGYQL NVLNEAETPP FPLNEYSDVG
EETRLRYRFI DLRRPEMADK LRLRSRITSS IRRFLDENGF LDVETPILTR ATPEGARDYL
VPSRTHAGSF FALPQSPQLF KQLLMVAGFD RYYQIAKCFR DEDLRADRQP EFTQIDIETS
FLDESEIMGL TESMIRKLFK EVLDLEFGEF PHMTFEEAMR RYGSDKPDLR NPLELVDVAD
QLKDVDFKVF AGPANDPKCR VTALRLPGGA SMPRSKIDEY TKFVGIYGAK GLAYIKVNER
AKGVEGLQSP IVKNIPEANL NNILDRVGAV DGDIVFFGAD KFKVVSEALG ALRIRLGHDF
ELLTCEWAPM WVVDFPMFEE NEDGSFTALH HPFTAPKCTP EELEANPATA LSRAYDMVLN
GTELGGGSIR IHRKEMQQAV FRLLGIEAEE QEEKFGFLLD ALKFGAPPHG GLAFGLDRLV
MLMTGAQSIR EVIAFPKTQS AACVMTQAPG LVDAKALREL HIRLREQTKV E
|
|---|
| |