| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4181 |
|---|
| Symbol | |
|---|
| ID | 5871981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 4678241 |
|---|
| End bp | 4679128 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641549308 |
|---|
| Product | dihydrodipicolinate synthase |
|---|
| Protein accession | YP_001670405 |
|---|
| Protein GI | 167035174 |
|---|
| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
|---|
| TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGCGG GCAGTATGGT GGCATTGGTC ACACCCATGG ATGCACAAGG GCGTCTTGAT
TGGGGCAGCC TCGACAAACT TGTAGACTTC CACCTGGAAA ACGGCACCCA TGCGATCGTC
GCTGTCGGCA CCACCGGTGA GTCCGCCACG CTGGATGTCG AAGAACACAT CCTGGTCATC
AAGCACGTGG TCGAGCGCGT CAAGCACAGC AAGAAGCCGA TTCCGGTCAT CGCCGGCACC
GGTGCCAACT CCACCGCCGA AGCCGTGCAC CTGACCCAGA ACGCCAAGAA TGCCGGCGCT
GACGCCTGCC TGCTGGTCGT GCCGTACTAC AACAAGCCGA CGCAAGAAGG CCTGTACCAG
CACTTCAAGC ACATTGCCGA AGCCGTCGAC ATTCCGCAGA TCCTCTATAA CGTACCCGGC
CGCACCTCCT GCGACATGCA GGCCGAGACC GTGATCCGCC TGTCGACCGT GCCGAACATC
ATCGGCATCA AGGAAGCCAC CGGCGACCTG GTTCGCGCCA AGGCCATCCT CGATGGCGTC
AGCAAGGACT TCATCGTCAT GTCCGGCGAC GACCCGACGG CCGTCGAGCT GATCCTGATG
GGCGGCAAGG GCAACATTTC GGTCACCGCC AACGTCGCCC CGCGCGAAAT GGCCGACCTG
TGCGAGGCCG CCCTTGAGGG CAATGCCGAG AAGGCCCGTG CAATCAACGA AAAACTCATG
CCGCTGCACA AAGACCTGTT CTGCGAAGCC AACCCGATCC CGGTGAAATG GGCGCTCGTT
GAAATGGGCC TGATGCACAA AGGCATTCGC CTGCCACTGA CCTGGCTGAG CGAAGGCTGC
CACGAAAAAG TCCGTACTGC CTTGCGCCAG TCCGGCGTAC TGGTTTAA
|
|---|
| Protein sequence | MIAGSMVALV TPMDAQGRLD WGSLDKLVDF HLENGTHAIV AVGTTGESAT LDVEEHILVI
KHVVERVKHS KKPIPVIAGT GANSTAEAVH LTQNAKNAGA DACLLVVPYY NKPTQEGLYQ
HFKHIAEAVD IPQILYNVPG RTSCDMQAET VIRLSTVPNI IGIKEATGDL VRAKAILDGV
SKDFIVMSGD DPTAVELILM GGKGNISVTA NVAPREMADL CEAALEGNAE KARAINEKLM
PLHKDLFCEA NPIPVKWALV EMGLMHKGIR LPLTWLSEGC HEKVRTALRQ SGVLV
|
|---|
| |