| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4130 |
|---|
| Symbol | |
|---|
| ID | 5871930 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 4612516 |
|---|
| End bp | 4613403 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641549258 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001670356 |
|---|
| Protein GI | 167035125 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.493981 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACATCA AGCAGCTCAA GTTCCTCATC GCCCTCGACC AGACCCGCCA CTTCGGCCAG
GCCGCGGCGC TGTGCCATAT CACCCAGCCG ACGCTGTCCA TGCGCCTGCG CAACCTGGAA
GACGAACTGG ACCTGGTACT GGTCAAGCGT GGCCAGCGCT TCGAGGGTTT CACCGAGGCC
GGCGAGCGCA TCCTGGCCTG GGCCCGCACC CTGCTCGCCG CCCACGACGG CCTGCAGGCC
GAGGCCGCCA GCTGCCGCGG CCAGGTGGTC GGCAGCCTGC GCCTGGGCAC CGTGCCGCTG
GCCAGCTTCA ACCCCATGCA CCTGCTGCTG CCGCTGCGCG AAAAGTACCC CGAACTGCAC
TTTCAGCTCA GCTCGCTGAG CTCGGAGCAG GTCATCGACG GGCTCAGCCG CAACCAGCTC
GACCTGGGTA TCTGCTACCT GGACCAGGTC AACACCAGCT TCTTCGACGT GATCGAGCTG
GGCACGACCA CCATGGGCCT GCTGCACGAC ACTCGGCACT TCCAGTTCGC CAGCGACACG
CTGCGTTGGG ACGAACTCGG CGACATTCCG CTAGGGCTGC TGAGCAAAGG CATGCACTAC
CGCCAGTCGC TGGACCTGAG CTTCCGCAGC CGTGGCCTGG AGCCCAATGC GGTGCTGGAG
AGCGACTCGA GCTTCCAGCT GATCCAGGCG ATCAACACCG GCATGTGCTG CGCGATCATG
CCGCTTGACT GCGGCCTGGA AGACCTCAGC GAACACCTGC GTATACTGCC GGTGGCCGAC
GCCGCCATCC ATAGCCCGGT CGGTTTGCTG CTGCGCCGCA GCGAGCCGCG CTCGGCAATT
GCCGAACAAT GCTTTGCCGA AGCGCGCGGG CTGTTTCAAG CCACCTGA
|
|---|
| Protein sequence | MDIKQLKFLI ALDQTRHFGQ AAALCHITQP TLSMRLRNLE DELDLVLVKR GQRFEGFTEA
GERILAWART LLAAHDGLQA EAASCRGQVV GSLRLGTVPL ASFNPMHLLL PLREKYPELH
FQLSSLSSEQ VIDGLSRNQL DLGICYLDQV NTSFFDVIEL GTTTMGLLHD TRHFQFASDT
LRWDELGDIP LGLLSKGMHY RQSLDLSFRS RGLEPNAVLE SDSSFQLIQA INTGMCCAIM
PLDCGLEDLS EHLRILPVAD AAIHSPVGLL LRRSEPRSAI AEQCFAEARG LFQAT
|
|---|
| |