| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4025 |
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| Symbol | |
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| ID | 5871825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 4476430 |
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| End bp | 4477788 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641549153 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_001670251 |
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| Protein GI | 167035020 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.0350176 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCGTTT TGAACCCCAT CACCAGTGCA TTACTGTTGG CCCTGGCGAG TGCCAACGTA
CAGGCGATGT CGATCACCGA GGCCGTCCAA AGCGCCGTGG ACTACCACCC ACAAGTCAGC
TCCAACCGTA ACAGCAAGCT GTCGGCCGAT GAAGACGTGA AGTTTGCGCG TGGTGGCTAC
TACCCTTCCG TGGACCTGGT CGCCGGCTAC GGCCGCCAGC GTTCGGACAA TACCACCACC
CGTGCCGAGG GTAACCACAA CAAGGAAACC CTCAGCTACA CCCAGTCCGA GCTGCGCCTG
CGGCAGATGA TCTTCGACGG CTTCAACACC TCGAATGAAG TGGGCCGCAC CGAGGCTGTC
TCTACCTCCC GCGCCTACTA CACCCAGGCT GTTGCCCAGG ATGTCGCCCT GCGTGCGGTC
GAGGTGTACC TGGAAGTGCT CAAGCGCCGC GAGCTGGTGA CCCTGGCCAA GAACAACCTG
CAAGCCCACC TGCGCGTCAA CGACCAGATC GGCCTGCGTA ACGAGCGCGG CGTTGGCAGC
ACCGCCGACC TTGACCAGTC CCGCGCCCGT CGCGCCCTGG CGGAAAACAA CCTGGACACC
GCCGAAGTCG ACCTGGCCGA TGCCGAGGCC AACTTCTTCA GCGTGATCGG CCGCGCGCCG
GACGAGCTGG AAAGCCCGCA AACCATCAAG GGCGAGGTGC CTGAGAGCCT CGAGGGGGCA
CGCGACAGCA TGCGCCAGAA CAACCCTTAC ATCAAATCTG CACAGGCTGA CGTCAATGCG
GCCGAGCAGC AGTACGAAGT GGGCAAGTCG ACCTTCTACC CGCGCTTCGA CGCCATTCTG
GCAACCGGTG CCAACAACAA CACCGGCGGC GAAAAAGGCC ACAACAACAA CGACTGGCAA
GCTGGCGTGG AGATGAACTA CAACCTGTTC CGCGGCGGTA GTGACAAGGC GCGCCTGCAG
TCCGACGCGC ACAAGATCAA CCAGGCCCTG GACATCCGCA ACAACGCCCT GCGTGAGTTG
ACCGAGAACC TGAGCCTGGC GTGGAACGCC ATGAACAATG CCAGCAAACA GCTGCCGACC
GCGCGTGAAT ACGCCGAGAC CACCAAGCGC GTACGTGCGG CCTACCAGGA CCAGTTCGGC
CTGGGCCAGC GTACCTTGCT GGACGTGCTG GACAGTGAGA ACGAGCTGTA CAACGCAGAC
CGCCGCTATA CCGAGGTGCG TTATACCGAG GAGTTCTCGC GCTACCGCGT GCTGGCGACC
ATGGGTGAGT TGCTGACCAA GCAGCGTATT TCGCTGCCAC CAGAGGCGCT GGCGACTACC
GAAGTGCGCA CTGAGGCGCG TCTGCCTGAG ATGCGCTGA
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| Protein sequence | MRVLNPITSA LLLALASANV QAMSITEAVQ SAVDYHPQVS SNRNSKLSAD EDVKFARGGY
YPSVDLVAGY GRQRSDNTTT RAEGNHNKET LSYTQSELRL RQMIFDGFNT SNEVGRTEAV
STSRAYYTQA VAQDVALRAV EVYLEVLKRR ELVTLAKNNL QAHLRVNDQI GLRNERGVGS
TADLDQSRAR RALAENNLDT AEVDLADAEA NFFSVIGRAP DELESPQTIK GEVPESLEGA
RDSMRQNNPY IKSAQADVNA AEQQYEVGKS TFYPRFDAIL ATGANNNTGG EKGHNNNDWQ
AGVEMNYNLF RGGSDKARLQ SDAHKINQAL DIRNNALREL TENLSLAWNA MNNASKQLPT
AREYAETTKR VRAAYQDQFG LGQRTLLDVL DSENELYNAD RRYTEVRYTE EFSRYRVLAT
MGELLTKQRI SLPPEALATT EVRTEARLPE MR
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