Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_4020 |
Symbol | |
ID | 5871820 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 4469956 |
End bp | 4472142 |
Gene Length | 2187 bp |
Protein Length | 728 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641549148 |
Product | patatin |
Protein accession | YP_001670246 |
Protein GI | 167035015 |
COG category | [R] General function prediction only |
COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.0160946 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCCGTT TGCTGTTCTG TTTTCTGCTT GCCCTCACCA CGCTTGCGGC AACCGCCGCC GAACCTGCCA GGCCCAAGGT CGGCCTGGTA CTGTCGGGTG GTGCGGCCCG TGGCCTGGCT CACATCGGCG TGCTCAAGGC GCTGGAAGAA CAGGGTGTGC GCATCGACGC CATCGCCGGC ACCAGCATGG GCGCAGTGGT CGGCGGGTTG TACGCCTCGG GCTACAGTGT CGAAGAGCTG GAAAAGCTCG CCACCACCCT GGACTGGCAA CAGGCGCTGT CCGATGCCCC GCCACGCAAG GACGTGCCGT TTAGGCGCAA GCAGGATGAC CGCGACTTCC TGGTCAAACA GAAGCTCAGC TTTCGTGACG ACGGCAGCCT GGGCCTGCCA CTGGGGGTAA TCCAGGGCCA GAACTTGTCA CTGCTGCTGG AAAGCAAACT GGCGCACACC GCCGACACCC GCGACTTCGA CAAGCTGCCT ATCCCCTTCC GCGCCGTGGC CACCGACATC GCCAGTGGCG AAAAAGTAGT GTTTCGCCGC GGCCACCTGC CACAGGTCAT TCGCGCCAGC ATGTCGATCC CTGCCGTGTT CGCCCCGGTC GAGCTGGACG GCCGACTGCT GGTGGACGGT GGCATGGTCG ACAACATTCC GGTCGACGTG GCCCGCGAAA TGGGCGTGGA CCTGGCCATC GTGGTCGACA TCGGCACCCC ACTGAAGGAT CGCAAGCAAT TACTGACCGT GGTCGACGTG CTCAACCAGT CGATCACCCT GATGACCCGG CGCAACTCGG AAGAACAACT GGCCAGCCTG CACCGCGACG ACATCCTCAT CCAACCATCG CTGACCGCCT TCGGCGTGAC CGATTTTGGC CGCGCCAGGG ACATGATCGA CGCCGGTTAC CGCGCCACCC GCCTGCTCGA CCCTCGCCTG GCTGCCCTGC GCCAGCCCGA AGGCGACAGC AGCCTGGCCG TGGCCCGCTC GCCGCGCCAG CGCACACCGG TGATCACCGC GATCCGAATC GAGAACGACT CCAAGGTCAG CGACGACGTG ATTCGCTCGT ACATCCGCCA ACCGATCGAC GCGCCGTTGG AGCTGGACCG CCTGCAGACC GACATGGGTA CGCTGTACGG CCTGGATTAC TTCGACCGGG TGCAGTACCG CGTGGTGCAC AAGGGCGACG ACAACACCCT GGTGATCAAC GCCCGTGGCC GGCGCGGCGG CACCGACTAC CTGCGTCTGG GCCTTAACCT GTCCGATGAC CTGCGTGGCG ACAGCGCCTT CAACCTGGGT GCCAGCTACC GGGTCAACGG CATCAACAGC CTCGGCGCAG AATGGCTGAC CCGTGGCCAG ATCGGCGACC AGCAAGAGCT GTACAGCGAG TTCTACCAAC CGCTGGACGT GGGCTCGCGC TACTTTGTCG CGCCTTACCT GGATTTCAGC TCGCAGAACA TCGAAGCCAC CCTGGACAAC GACCCGGTCG CCGAATACCG CCTGGAGCGC TACGGCTTTG GCCTGAACGT GGGCCGGCAG ATCGGCACCA GCGGTGAAGT GCGCCTGGGC GTGGGCAAGG CCTGGGGCGA GGCCGAGGTG CGCATCGGCG ACCAGGACCT GCCCAAAGTC AGTTTCAACG AAGGCTTCTA CGAGCTGAAG TACTCGTTCG ACACCCTCGA CAACGTGTAC TTCCCGCACC GAGGCGAGGA CATCGGCCTG ACCTTGCGCA AATACGACAA GTCGCTGGAC TCCGACCAGG ATTACCGGCA GTGGCTGTTC AACCTGGACA AGGCGATCAG CAGTGGGCCG AACACCTTCG TGCTGGGCGG TCGCTATGGG CGCACGCTGG ATGACACCGA AGTGGTGACG TCGAGCTTCG TGATGGGCGG AGCGCGAGAG CTGTCAGGCT TTCGCCAGGA CTCGGTGTCG GGGCAGAACG TGAGCCTGCT GCGCATGGTC TACTACCGCC GCTTGACGCC AAGGGCCTAT GTGCCGCTGG ACTTCCCGTT GTACATCGGC GGGTCGCTGG AGCGTGGGCG GGCATGGAAC AACGACAACG AGTTCGACAG TGGGTACATC AATGCGGCGA GCATCTTCCT GGGGCTGGAG ACGCCGTTGG GGCCGTTGAA CTTCACCTAC GGCACCAACA GTGCGCATGA GCATGCGGTG TATCTGAACC TGGGGCATAC CTTCTGA
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Protein sequence | MRRLLFCFLL ALTTLAATAA EPARPKVGLV LSGGAARGLA HIGVLKALEE QGVRIDAIAG TSMGAVVGGL YASGYSVEEL EKLATTLDWQ QALSDAPPRK DVPFRRKQDD RDFLVKQKLS FRDDGSLGLP LGVIQGQNLS LLLESKLAHT ADTRDFDKLP IPFRAVATDI ASGEKVVFRR GHLPQVIRAS MSIPAVFAPV ELDGRLLVDG GMVDNIPVDV AREMGVDLAI VVDIGTPLKD RKQLLTVVDV LNQSITLMTR RNSEEQLASL HRDDILIQPS LTAFGVTDFG RARDMIDAGY RATRLLDPRL AALRQPEGDS SLAVARSPRQ RTPVITAIRI ENDSKVSDDV IRSYIRQPID APLELDRLQT DMGTLYGLDY FDRVQYRVVH KGDDNTLVIN ARGRRGGTDY LRLGLNLSDD LRGDSAFNLG ASYRVNGINS LGAEWLTRGQ IGDQQELYSE FYQPLDVGSR YFVAPYLDFS SQNIEATLDN DPVAEYRLER YGFGLNVGRQ IGTSGEVRLG VGKAWGEAEV RIGDQDLPKV SFNEGFYELK YSFDTLDNVY FPHRGEDIGL TLRKYDKSLD SDQDYRQWLF NLDKAISSGP NTFVLGGRYG RTLDDTEVVT SSFVMGGARE LSGFRQDSVS GQNVSLLRMV YYRRLTPRAY VPLDFPLYIG GSLERGRAWN NDNEFDSGYI NAASIFLGLE TPLGPLNFTY GTNSAHEHAV YLNLGHTF
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