| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4018 |
|---|
| Symbol | |
|---|
| ID | 5871818 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 4468716 |
|---|
| End bp | 4469606 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641549146 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001670244 |
|---|
| Protein GI | 167035013 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2962] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.00321075 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACCACC GCACAGCCCT AGGCGCCCTG CACATTGGCG CGCTGTTTTT CGGCCTTACC
GGCGTCTTCG GCAAGCTGGC CGCCAGCGCC AGCCCGGCAA TCATCGTCTT TGGCCGCGCC
GCCTTCGCCG TGCTCGCCCT GGCTCTGTTC GCCAGCCTGG CCGGCCCGGG CTGGCAACGC
CTCAGCGGCC AGGACGCACG CCGCCTGCTG CTCGGCGGTG TGCTGCTGGC CGGCCACTGG
GTCAGTTTCT TCATCGCCGT CAAAGTCGGC GGCGTGGCCA TCGCCACCCT CGGTTTCGCC
AGTTTCCCGG CCTTCACCGT GATCCTCGAA GGCCTGCTGT TCCGCGAGCG TATCCGCCGC
AACGAAACCG TATTGGTCGT GCTGGTCAGC CTCGGCCTGG TACTGGTCAC GCCGGCATTC
GACCTGGCCA GCGAAGCCAC TGGCGGCCTG CTCTGGGCAC TGCTCTCGGG CCTGCTGTTC
TCGCTGCTGT CACTCACCAA CCGGGCCGGC TCCGGCCGTT TGCCTGCGGT ACAGGCAGCG
CTGTGGCAGA ACCTGGTAGT GGGCCTGTGC CTGCTGCCGT TCGCGGCCCC TGGCCTGGGC
GGCGTAGCCC CCGTGGACTG GCTGTGGATC GCCCTGCTCG GCGTCTTCTG CACCGGCGTT
GCGCACAGCC TGTTCGTCGC CAGCCTGGCA GTGATCAAGG CGCGCACGGC CGCCGTGGTG
TTCGGCATGG AGCCGGTCTA CGGGATTGCC GTGGCGTGGG CGGTGTTCGC CGAAACCCCC
ACCGTGCGCA TGCTGCTGGG CGGCGCACTG ATCATCTTCG CCATCGTGCT GTCCAGCCGC
CTGGCTGCCG AGCAACCGCC CAGGCAGCGG CCACTGCCCG AGGGGGCTTG A
|
|---|
| Protein sequence | MNHRTALGAL HIGALFFGLT GVFGKLAASA SPAIIVFGRA AFAVLALALF ASLAGPGWQR
LSGQDARRLL LGGVLLAGHW VSFFIAVKVG GVAIATLGFA SFPAFTVILE GLLFRERIRR
NETVLVVLVS LGLVLVTPAF DLASEATGGL LWALLSGLLF SLLSLTNRAG SGRLPAVQAA
LWQNLVVGLC LLPFAAPGLG GVAPVDWLWI ALLGVFCTGV AHSLFVASLA VIKARTAAVV
FGMEPVYGIA VAWAVFAETP TVRMLLGGAL IIFAIVLSSR LAAEQPPRQR PLPEGA
|
|---|
| |