| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4014 |
|---|
| Symbol | |
|---|
| ID | 5871814 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 4465328 |
|---|
| End bp | 4466389 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641549142 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001670240 |
|---|
| Protein GI | 167035009 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.000489345 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAA GAACCACGTC AGCCAGTTGG GCATCAGGGA TTGTGAAGGC ACTTGAACTG
GAGGGGCTGG ATTGCCGGGC CATGTTCAAG CAGCTAGGGC TGGACTTTGC CGCACTCGAC
GACCCGGATG CACGTTTTCC GCAAGACTCC ATGACCCGGC TATGGCAGCT GGCAGTGGAA
CTGTCAGGCA ACGAGGCCAT CGGTCTGAAC ATGGCGCGGG TGGTGCGCCC GGCGTCGTTC
CATGTGGTGG GCTATGCGTT GATGTCCAGC CGCACCTTGG CCGAGGGCTT CGAACGCCTG
GTGCGCTACC AGCGCATCAT TGCCGAAAGC TCCGACCTCA GTTTTGTCCT TGGCGCCGAG
GGCTACTCGC TGATCCTGAC CGTCCACGGT GACCACCTGC CGCCGACCCG GCACAGTGCC
GAAGCGTCGC TGGCCTGCGC ATTGGCGCTG TGCAAATGGC TCAGTGGCCG GCCGGTGCAG
CCGCGGCGGG TATTGGTGCA AGGGCCGCAG CCAAAGAACG TCGAGCCGTA CAAGGTGGCG
TTCCATTCGC CGCTGGTTTT CGGCGCGCCA CACGATGCCC TGGTGTTCGA GCGGGCCGAC
ATGGAAGCCC CGCTGCCTAC CGCCAACGAG GCCATGGCGG TGCTGCACGA CCGGTTTGCC
GGGGAGTACC TGGCACGTTT CTCCGAAAGC CGGGTAACCC ACCGGGTGCG CCAGGTGTTG
TGCCGCATTC TGCCGCAGGG TGAACCGAAG CGTGAAACCC TGGCCCAGGC CCTGCACCTG
TCGCAGCGGA CCTTGCAGCG GCGGCTGCAG GAGGAGGGCA CCAGCTTCCA GACCCTGCTT
GACGATACCC GCCGCGAGCT GGCCGAACAG TACCTGGCGC AGCCGGGCAT GACTTTGCTT
GAGGCCGCCT ACCTGCTCGG CTTCGCCGAC CCCAGCAACT TCTATCGGGC GTTCCGCCGC
TGGTTCGACG CCACACCCAG CGAGTACCGC GCCCGCCTGG GCACCGAAGC CGAAGTGGTC
AATGACGCCA GAACGCCGGC ATGCACAACA CTAGTACCGT GA
|
|---|
| Protein sequence | MSERTTSASW ASGIVKALEL EGLDCRAMFK QLGLDFAALD DPDARFPQDS MTRLWQLAVE
LSGNEAIGLN MARVVRPASF HVVGYALMSS RTLAEGFERL VRYQRIIAES SDLSFVLGAE
GYSLILTVHG DHLPPTRHSA EASLACALAL CKWLSGRPVQ PRRVLVQGPQ PKNVEPYKVA
FHSPLVFGAP HDALVFERAD MEAPLPTANE AMAVLHDRFA GEYLARFSES RVTHRVRQVL
CRILPQGEPK RETLAQALHL SQRTLQRRLQ EEGTSFQTLL DDTRRELAEQ YLAQPGMTLL
EAAYLLGFAD PSNFYRAFRR WFDATPSEYR ARLGTEAEVV NDARTPACTT LVP
|
|---|
| |