| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4001 |
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| Symbol | |
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| ID | 5871801 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 4452955 |
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| End bp | 4454358 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641549129 |
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| Product | amino acid permease-associated region |
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| Protein accession | YP_001670227 |
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| Protein GI | 167034996 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.070597 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0000638701 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCATTCAG GCGAGCTAAA GCGGGGCCTG AAGAACCGCC ATATCCAATT GATCGCCCTG
GGTGGTGCGA TTGGTACTGG CCTGTTCCTC GGCTCGGCAG GCGTGATGAA ATCCGCCGGC
CCGTCAATGA TTCTTGGCTA CGCCATTTGC GGCTTCATCG CCTTCATGAT CATGCGCCAG
CTTGGCGAAA TGATCGTCGA AGAGCCGGTG GCCGGCTCGT TCAGCCATTT CGCCCATACC
TACTGGGGTG GTTTCGCCGG CTTCCTGTCG GGCTGGAACT GCTGGGTGCT GTACATCCTG
GTGGGCATGT CGGAGCTTTC GGCGGTCGGC AAGTATGTTC ACTACTGGTG GCCGGAAATC
CCTACCTGGG TCACGGCGGC GGCGTTCTTC GTGCTGATCA ACGCCATCAA CCTGATGAAC
GTGAAGTTCT TCGGTGAAGC TGAATTCTGG TTTGCCATCA TCAAGGTGGT CGCCATCGTC
AGCATGATCG GCCTGGGTGC CTACCTGCTC ACCAGCGGCA GCGGCGGCCC GGACGCCACT
GTCGCCAACC TGTGGTCCCA TGGCGGCTTC TTCCCGAACG GTGTCAGCGG GCTGGTGATG
GCCCTGGCGT TCATCATGTT CTCCTTTGGT GGCCTGGAAA TGCTCGGCTT TACCGCCGCC
GAGGCCGACA AGCCGAAGTC CGTGATCCCC AAAGCGATCA ACCAGGTCAT CTACCGCATC
CTGATCTTCT ATGTGGGTGC CTTGGTGGTG CTGCTGTCGC TGACCCCGTG GGACAACCTG
GTCGCCAGCA TCGATGCCTC GGGTGGCAGC TACGGCAGCA GCCCGTTCGT GCAGGTGTTC
TCGCTGCTGG GCAGTGACGT GGCCGCCCAC CTGTTGAACT TCGTGGTACT GACCGCTGCG
CTGTCTGTGT ACAACAGCGG CACCTACTGC AATGCCCGCA TGCTGTTGGG CATGGCCGAG
CAGGGCGATG CCCCGGCGTC GCTGGCCAAA GTCGACAAGC GTGGCGTGCC AGTGCGTTCG
ATCCTGGTGT CGGCTGCCTT TACCTTCGTC GCCGTGCTGC TCAACTACCT GATGCCTCAG
AACGCCTTGG AGCTGCTGAT GTCGCTGGTA GTGGCGACCC TGGTGATCAA CTGGGCGATG
ATCAGCTATT CGCACCTGAA GTTCCGTCAG CACCTCGACC GTACCGGCCA GAAGCCGCTG
TTCAAGGCGA TGTGGTACCC CTACGGCAAC TACCTGGTGC TGGCCTTCGT GGTGCTGATC
CTTGGCATCA TGCTGATGAT CCCGGGTATT CAGGTGTCGG TGTATGCCAT TCCGTTCTGG
CTGTTCGGGA TGTTTGTGAT CTACATGGTC AAGCCGCGCC GCAAGCTCAA TGCCGGTGGT
GCTGCGGGTC ACGTGGCCAA GTAA
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| Protein sequence | MHSGELKRGL KNRHIQLIAL GGAIGTGLFL GSAGVMKSAG PSMILGYAIC GFIAFMIMRQ
LGEMIVEEPV AGSFSHFAHT YWGGFAGFLS GWNCWVLYIL VGMSELSAVG KYVHYWWPEI
PTWVTAAAFF VLINAINLMN VKFFGEAEFW FAIIKVVAIV SMIGLGAYLL TSGSGGPDAT
VANLWSHGGF FPNGVSGLVM ALAFIMFSFG GLEMLGFTAA EADKPKSVIP KAINQVIYRI
LIFYVGALVV LLSLTPWDNL VASIDASGGS YGSSPFVQVF SLLGSDVAAH LLNFVVLTAA
LSVYNSGTYC NARMLLGMAE QGDAPASLAK VDKRGVPVRS ILVSAAFTFV AVLLNYLMPQ
NALELLMSLV VATLVINWAM ISYSHLKFRQ HLDRTGQKPL FKAMWYPYGN YLVLAFVVLI
LGIMLMIPGI QVSVYAIPFW LFGMFVIYMV KPRRKLNAGG AAGHVAK
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