Gene PputGB1_3999 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_3999 
Symbol 
ID5871799 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp4448829 
End bp4451849 
Gene Length3021 bp 
Protein Length1006 aa 
Translation table11 
GC content65% 
IMG OID641549127 
ProductFAD linked oxidase domain-containing protein 
Protein accessionYP_001670225 
Protein GI167034994 
COG category[C] Energy production and conversion 
COG ID[COG0247] Fe-S oxidoreductase
[COG0277] FAD/FMN-containing dehydrogenases 
TIGRFAM ID[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.00316797 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATCGCCC AGCTGTCGAC CGTTGCACCG AGCGCCAATT ACCCCGAATT CCTCGAAGCC 
CTGCGCAACA GCGGCTTCCG TGGCCAGATC AGTGCCGACT ACGCTACCCG CACCGTGCTG
GCCACCGACA ACTCGATCTA CCAGCGCTTG CCGCAAGCGG CGGTGTTTCC GCTGGATGCC
GACGATGTGG CGCGGGTCGC CACGCTGATG GGCGAGCCGC GCTTCCAGCA GGTCAAGCTT
ACCCCGCGCG GCGGTGGCAC TGGCACCAAC GGGCAGTCGC TGACCGACGG TATCGTCGTC
GACTTGTCGC GGCACATGAA CAAGATCCTC GAAATCAACG TCGAGGAGCG TTGGGTACGG
GTGCAGGCCG GTACGGTCAA GGACCAGCTC AATGCTGCGC TCAAGCCGCA CGGGCTGTTC
TTCGCCCCTG AGCTGTCCAC CTCCAACCGC GCCACGGTTG GCGGCATGAT CAACACCGAC
GCCAGTGGCC AGGGCAGTTG CACCTACGGC AAAACCCGCG ATCACGTACT GGAGCTGCAC
AGCGTGCTGC TCGGTGGTGA GCGCCTGCAC AGCCTGCCGA TCGGCGATGC CGCGCTGGAG
CAAGCCTGTG CCGCGCCCGG CCGGGTCGGC GAGGTGTACC GCATGGCCCG GGACATTCAG
CAAACCCAGG GCGAATTGAT CGAAACCACC TTCCCCAAGC TCAACCGTTG CCTGACCGGC
TACGACCTCG CGCACCTGCG CGACGAGCAG GGGCGCTTCA ACCTCAACAG CGTGTTGTGT
GGCGCCGAGG GCTCGCTGGG CTACGTGGTC GAAGCCAAGC TCAACGTTTT GCCGATCCCC
AAGTACGCGG TGCTGGTCAA CGTACGCTAC ACCAGCTTCA TGGACGCGCT GCGCGACGCT
AATGCGCTGA TGGCGCACAA GCCGCTGTCG ATCGAGACGG TTGATTCCAA GGTGCTGATG
CTGGCGATGA AAGACATCGT CTGGCACAGC GTTGCCGAGT ACTTCCCGGC CGACCCCGAG
CGCCCGACCC TGGGTATCAA CCTGGTGGAG TTCTGTGGCG ACGAGCCGGC TGAGGTCAAC
GCCAAGGTGC AGGCGTTCAT CCAGCACCTG CAAAGCGATA CCAGCGTCGA GCGCCTGGGC
CACACCCTTG CCGAGGGGGC GGAGGCAGTC ACTCGCGTGT ACACCATGCG TAAACGTTCG
GTAGGGCTGC TGGGCAACGT CGAAGGCGAG GTACGGCCGC AGCCGTTCGT TGAAGACACC
GCCGTACCGC CGGAGCAGTT GGCCGACTAC ATCGCCGATT TCCGCGCGCT GCTCGATGGC
TACGGCCTGG CCTACGGCAT GTTCGGCCAT GTCGATGCCG GCGTGCTGCA CGTGCGCCCG
GCACTGGACA TGAAAGACCC GGCGCAGGCC GCATTGGTCA AGCCGATTTC CGACGCCGTT
GCCGCTCTGA CCAAAAGCTA CGGCGGCCTG CTGTGGGGCG AGCACGGCAA GGGCCTGCGC
TCGGAATACG TGCCGGAGTA CTTCGGCGAG CTGTACCCGG CGCTGCAGCG TCTGAAGGGT
GCGTTCGACC CGCACAACCA GCTCAATCCC GGCAAGATCT GCACCCCACT GGGCAGCTCA
GAGGGCCTGA CTCCGGTCGA TGGCGTGACC CTGCGCGGCG ACCTCGACCG TACCATCGAC
GAGCGCGTGT GGCAGGACTT CCCCAGTGCC GTGCACTGCA ACGGCAATGG CGCCTGCTAC
AACTACGACC CCAACGACGC CATGTGCCCG TCGTGGAAGG CTACCCGCGA GCGTCAGCAT
TCGCCCAAGG GTCGCGCCTC GCTGATGCGC GAGTGGCTGC GCCTGCAGGG CGAGGCGAAC
ATCGACGTGC TGGCGGCGGC GCGTAGCAAG GTGTCGTGGC TCAAGGGCCT GCCGGTGCGC
CTGCGCAATA ACCGCGCACG CAGCCAGGGC CAGGAAGACT TTTCCCATGA GGTATACGAC
GCCATGGCCG GCTGCCTGGC GTGCAAGTCG TGCGCCGGGC AGTGCCCGAT CAAGGTCAAC
GTGCCGGACT TCCGCTCGCG CTTCCTCGAG CTGTATCACG GTCGCTACCA GCGCCCGCTG
CGTGACTACC TGATTGGCTC GCTGGAGTTC ACCATCCCGT ACCTGGCCCA TGCGCCGGGG
CTGTACAACG CCGTGATGGG CTCGAAGTGG GTGAGCAAGC TGCTGGCCGA CAAGGTGGGG
ATGGTCGACA GCCCGCTGAT CAGCCGCTTC AACTTCCAGG CCACCCTGAC CCGCTGCCGC
GTTGGCGTGG CCACGGTGCC GACACTGCGC GAGCTGACCC CGGCCCAGCG CGAGCGCAGC
ATCGTGCTGG TGCAGGATGC CTTCACTCGC TACTTTGAAA CGCCGCTGCT GTCGGCCTTC
ATCGACCTGG CCCATCGCCT GGGCCACCGG GTGTTCCTGG CGCCTTACAG CGCCAACGGC
AAGCCGCTGC ACGTACAGGG CTTCCTGGGT GCGTTTGCCA AGGCGGCGCT CCGCAACGCC
ACCCAGCTCA AGGCCCTGGC CGAATGCGGC GTGCCGCTGG TAGGGCTGGA CCCGGCGATG
ACCCTGGTGT ATCGCCAGGA GTACCAGAAG GTGCCGGGCC TGGAAGGCTG CCCGCAGGTG
CTGTTGCCGC AGGAGTGGCT GATGAATGTG CTGCCTGAGC AGGCGCCGAC CGCACCGGGT
AACTTCCGCT TGATGGCACA CTGCACCGAG AAGACCAACG TGCCGGCCAG TACCAAGCAG
TGGGAGCAGG TGTTTGCCCG TTTGGGGCTG AAGCTGGTGA CCGAGGCCAC GGGGTGCTGC
GGCATGTCCG GCACTTATGG GCACGAAGCG CGCAATCAGG AAACCTCGCG GACCATCTTC
GAGCAGAGCT GGGCGACCAA GCTGGACAAG GAAGGAGAGC CGCTGGCGAC CGGTTATTCG
TGCCGTAGCC AGGTCAAGCG CATGACCGAA CGCAAGATGC GCCACCCGCT GGAAGTGGTG
TTGCAGTACG CCCAGCGTTA A
 
Protein sequence
MIAQLSTVAP SANYPEFLEA LRNSGFRGQI SADYATRTVL ATDNSIYQRL PQAAVFPLDA 
DDVARVATLM GEPRFQQVKL TPRGGGTGTN GQSLTDGIVV DLSRHMNKIL EINVEERWVR
VQAGTVKDQL NAALKPHGLF FAPELSTSNR ATVGGMINTD ASGQGSCTYG KTRDHVLELH
SVLLGGERLH SLPIGDAALE QACAAPGRVG EVYRMARDIQ QTQGELIETT FPKLNRCLTG
YDLAHLRDEQ GRFNLNSVLC GAEGSLGYVV EAKLNVLPIP KYAVLVNVRY TSFMDALRDA
NALMAHKPLS IETVDSKVLM LAMKDIVWHS VAEYFPADPE RPTLGINLVE FCGDEPAEVN
AKVQAFIQHL QSDTSVERLG HTLAEGAEAV TRVYTMRKRS VGLLGNVEGE VRPQPFVEDT
AVPPEQLADY IADFRALLDG YGLAYGMFGH VDAGVLHVRP ALDMKDPAQA ALVKPISDAV
AALTKSYGGL LWGEHGKGLR SEYVPEYFGE LYPALQRLKG AFDPHNQLNP GKICTPLGSS
EGLTPVDGVT LRGDLDRTID ERVWQDFPSA VHCNGNGACY NYDPNDAMCP SWKATRERQH
SPKGRASLMR EWLRLQGEAN IDVLAAARSK VSWLKGLPVR LRNNRARSQG QEDFSHEVYD
AMAGCLACKS CAGQCPIKVN VPDFRSRFLE LYHGRYQRPL RDYLIGSLEF TIPYLAHAPG
LYNAVMGSKW VSKLLADKVG MVDSPLISRF NFQATLTRCR VGVATVPTLR ELTPAQRERS
IVLVQDAFTR YFETPLLSAF IDLAHRLGHR VFLAPYSANG KPLHVQGFLG AFAKAALRNA
TQLKALAECG VPLVGLDPAM TLVYRQEYQK VPGLEGCPQV LLPQEWLMNV LPEQAPTAPG
NFRLMAHCTE KTNVPASTKQ WEQVFARLGL KLVTEATGCC GMSGTYGHEA RNQETSRTIF
EQSWATKLDK EGEPLATGYS CRSQVKRMTE RKMRHPLEVV LQYAQR