| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3980 |
|---|
| Symbol | |
|---|
| ID | 5871780 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 4427837 |
|---|
| End bp | 4428844 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641549108 |
|---|
| Product | succinylglutamate desuccinylase |
|---|
| Protein accession | YP_001670206 |
|---|
| Protein GI | 167034975 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2988] Succinylglutamate desuccinylase |
|---|
| TIGRFAM ID | [TIGR03242] succinylglutamate desuccinylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.38197 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGCCC TTGGCAAATT GCTTGAGCTG ACCCTCACCG ATCACGAACC GGCCGAGAAG
ACCCAAGTGA CACCCAAGGG CGCGCGTTTG CGCTGGCTGG GGGAGGGTGC GCTTGAAGTG
CGCCCGGCTG AAAGCGAGGA TTGCGGGCTG GATTTGCTGC TGTCCGCCGG CATTCATGGC
AACGAGACGG CGCCGATCGA ATTGCTGGAG CGGCTGCTGC ACGGCGTGGC CAACGGCAAG
ATCAAACCCA GGGCGCGCCT GCTGTTCCTG TTCGGCAACC CGGTGGCAAT CCGCAAGGGC
GAGCGCTTCA TCGAGCAGGA CATCAACCGC CTTTTCAATG GCCGTCACGA GCTTTCCAGC
GGTTTCGAGG CGTTGCGCGC CGCCGAGCTG GAGCAGTTTG CCAGGGTGTT CTTCAGCAAG
CCGGGGCGCA GCCGGCTGCA TTACGACCTG CATACCGCCA TCCGTGGTTC GAAGATCGAA
CAATTCGCCT TGTATCCCTA TAAAGAAGGG CGCAAGCACT CCCGTCGTGA ACTGGCGCGC
CTGGCGGCGG CGGGTATGGA AGCGGTGTTG CTGCAAAGCA AGTCGTCCAT CACCTTCAGC
GCATTCACCT ATGAACAGCT GGATGCCGAA GCCTTCACGC TGGAACTGGG CAAGGCCCGC
CCGTTCGGCC AGAACGAGCA GGTCAACCTC GACAAGCTGG AAGAGCGGCT GATCCGCATC
ATCGAGGCGA CCGAACCAGA AGGCGAAAGC TCGCTGGATG GCCTGCAACT GTTCAGTGTT
TCCCGTGAAA TCATCAAGCA CAGCGACAGC TTCCACCTGC ACCTGCCGGC GGATATCGAA
AACTTCTCCG AGCTGAGCAA GGGCTACCTG CTGGCCGAAG ACCTGGCCGA GATGCGCTGG
GTGGTCGAGG AGGAGGGCGC GCGCATCATC TTCCCCAACC CCAAGGTCAG GAACGGTTTG
CGCGCCGGTA TCCTGATTGT GCCGGATTCG GGGCAGCGGC TAGGCTGA
|
|---|
| Protein sequence | MLALGKLLEL TLTDHEPAEK TQVTPKGARL RWLGEGALEV RPAESEDCGL DLLLSAGIHG
NETAPIELLE RLLHGVANGK IKPRARLLFL FGNPVAIRKG ERFIEQDINR LFNGRHELSS
GFEALRAAEL EQFARVFFSK PGRSRLHYDL HTAIRGSKIE QFALYPYKEG RKHSRRELAR
LAAAGMEAVL LQSKSSITFS AFTYEQLDAE AFTLELGKAR PFGQNEQVNL DKLEERLIRI
IEATEPEGES SLDGLQLFSV SREIIKHSDS FHLHLPADIE NFSELSKGYL LAEDLAEMRW
VVEEEGARII FPNPKVRNGL RAGILIVPDS GQRLG
|
|---|
| |