| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3969 |
|---|
| Symbol | |
|---|
| ID | 5871763 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 4413620 |
|---|
| End bp | 4414993 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641549091 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001670195 |
|---|
| Protein GI | 167034964 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.502064 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACAC CCTCTTCGGC GGCATCGGTG AATGTCGCAA AAACAGCAGA CCAGGCCCCA
GCGGGCATCA AGCGTGTGGT AGCTGCGGCC ATGGCCGGCG CAGTCGCCGA GTGGTACGAA
TTTTTCCTTT ACGGCACCGC CTCGGCACTG GTCTTCGGCC AGCTGTTCTT CCGCCAGACC
GGCAGCGCCA TGGATGGGAT CATCGCCGCC TTTGCCCTCT ATGCCGTAGG TTTCCTCGCC
CGCCCCATCG GTGGCCTGGT GTTTGGCCAT TACGGTGACA AGGTTGGCCG CAAGCATTTA
CTGCAAATCA GCCTGATCGT GGTCGGGATA ACCACCTTCC TGATGGGCTG CCTGCCCACC
TTCGAACGCA TCGGCTATGC CGCACCCATC CTGTTGGTGG TGCTGCGGCT GATTCAGGGC
TTTGCCTTTG GCGGCGAATG GGGCGGCGCG GTGCTGCTGG TGTCCGAACA CAGCCCGGAC
AACCGCCGCG GCTTCTGGGC CAGTTGGCCA CAAGCGGGGG TGCCGGCCGG CAACCTGATC
GCCACCATCA TCCTGCTGCT GTTGTCATCC AACCTGAGCG AAGCGCAGTT CCTTGACTGG
GGTTGGCGGG TGGCCTTCTG GTTCTCGGCG GTGGTGGTGC TGATCGGCTA CTGGATCCGC
ACCCGGGTCG ACGATGCACC GATCTTCAAG GAAGCCCAGG CCAAGCAGCA GAAGCTGGAA
AGCCAACAAC TGGGCGTGGT GGAAGTGGTT ACCAAGTACT GGCGCGAAGT GCTGATCGGC
ATTGGCGCGC GCTTTGCGGA AAACATCCTT TACTACACCG TCGTCACCTT CTCCATCACC
TACCTGAAAC TGGTGGTGCA CAAGGACACC TCGCAAATCC TGCTACTGAT GTTCGGCGCC
CACCTGCTGC ACTTCTTCAT GATCCCGGCG ATGGGTTACC TGTCGGACAT CATTGGCCGC
AAGCCGGTGT ACCTGATCGG TGCCGTACTC ACTGCGTTCT GGGGTTTCGT CGGCTTCCCG
ATGATGGACA CCGGCAATGA CTGGCTGATC ATGGCGGCGA TCACCCTTGG CCTGGCCATC
GAGTCGATGA CCTATGCGCC CTATTCCGCG CTGATGGCCG AACTGTTCCC CACCCACGTG
CGCTACACCG CTCTTTCCCT GTGCTACCAG GTCGCGCCAA TCCTGGCTGG CTCGCTGGCG
CCACTGATCG CCGTGACCTT GCTGAAGGAA TACAACAGCT CAACGCCCAT CGCCTGGTAC
CTGGTGGCTG CGGCAGCCAT CTCGATCGTG GCCGTGGCGG CAGCCAAGGA GACCCGCGGC
AAGTCGCTGC GTGCTGTTGA CGAAGAATCC GTGGCCCGCA ACGCCAGCCG CTGA
|
|---|
| Protein sequence | MATPSSAASV NVAKTADQAP AGIKRVVAAA MAGAVAEWYE FFLYGTASAL VFGQLFFRQT
GSAMDGIIAA FALYAVGFLA RPIGGLVFGH YGDKVGRKHL LQISLIVVGI TTFLMGCLPT
FERIGYAAPI LLVVLRLIQG FAFGGEWGGA VLLVSEHSPD NRRGFWASWP QAGVPAGNLI
ATIILLLLSS NLSEAQFLDW GWRVAFWFSA VVVLIGYWIR TRVDDAPIFK EAQAKQQKLE
SQQLGVVEVV TKYWREVLIG IGARFAENIL YYTVVTFSIT YLKLVVHKDT SQILLLMFGA
HLLHFFMIPA MGYLSDIIGR KPVYLIGAVL TAFWGFVGFP MMDTGNDWLI MAAITLGLAI
ESMTYAPYSA LMAELFPTHV RYTALSLCYQ VAPILAGSLA PLIAVTLLKE YNSSTPIAWY
LVAAAAISIV AVAAAKETRG KSLRAVDEES VARNASR
|
|---|
| |