| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3966 |
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| Symbol | |
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| ID | 5871760 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 4410981 |
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| End bp | 4411979 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641549088 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001670192 |
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| Protein GI | 167034961 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 0.756589 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCAGG AAACCAGGCC GGCACCAGCC GGCTTCAGTG AACAGCAGTT GCACACTTTG
TTCGAGTTGA TCAGCGATGG CATCTGGGAC TGGAATGCCA ACACCGGTTA CGTTTATCGC
AATCCAGGCT GGTACACCAT GCTCGGTTAT GCCAGCCACT CCATGGCCAA CTCGGTTTTT
ACCTGGGAAA GCGTGATCCA TCCCGAAGAC TACACACGGG TAATGGCGCA TTTCGAGGCC
TACATCAATC AGCGCAACGA GCGCTACCTC ATCGAATACC GTTGCCGTTG CCAGGATGGC
AGCTACATCT GGATCGAAGA CAGCGGCTAT ATCATCGCGC ATAACGAAGA CGGCTCGGTG
GCACGCATGC TTGGTGCACA CCGCAACATC GACGCCGGCA AGCGCCTGGT GGCAGAGCTG
GAGCAGAAGA ACCAGTCGCT GGAATACCAG GTGGCCGAAC GCACCCGTGA GCTGTCCTGG
GTGAACCATC AGTTGCAGCG GCAACTGGAC GAAAACCGTG AACTGGCCGA ACGTGATGCG
TTGACCCGTG TCGCCAACCG CTATCGGCTG GAGAAAGCGT TGCAGTTGGA GTGCGAACGC
GCTCAGCGCT TCCGCCAGCC GTTATCGCTG ATCGCCATGG ACATGGATGA TTTCAAGCCC
ATCAACGACC GCTACGGTCA CGCCCGTGGC GATGCGGCGC TGGTCCGGGT GGCCGAAAAC
CTGCACACCT GCTTGCGCGA ATTGGACCTG CTGGCGCGTT GGGGCGGCGA CGAGTTCGTC
ATCGTGCTGC CGCAGACCAT GCTCGGGGAG GCGCTGGAGG TGGCGGCGCG CTTGCGCCAG
GCGATGGAGC AGCTGGAACC GGTGGGCGAT TGTCGGCTGA CCATGAGCTA TGGCGTGGTG
CAATGGCGGG AAGGGGAAGA CCAGCACGCG CTGCTGGCGC GGGCAGACAA GGCGCTTTAC
CGGGCCAAAG ATGCTGGCAA GAACGCGATT GCCGAGTGA
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| Protein sequence | MNQETRPAPA GFSEQQLHTL FELISDGIWD WNANTGYVYR NPGWYTMLGY ASHSMANSVF
TWESVIHPED YTRVMAHFEA YINQRNERYL IEYRCRCQDG SYIWIEDSGY IIAHNEDGSV
ARMLGAHRNI DAGKRLVAEL EQKNQSLEYQ VAERTRELSW VNHQLQRQLD ENRELAERDA
LTRVANRYRL EKALQLECER AQRFRQPLSL IAMDMDDFKP INDRYGHARG DAALVRVAEN
LHTCLRELDL LARWGGDEFV IVLPQTMLGE ALEVAARLRQ AMEQLEPVGD CRLTMSYGVV
QWREGEDQHA LLARADKALY RAKDAGKNAI AE
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