Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_3930 |
Symbol | fliF |
ID | 5871724 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 4373465 |
End bp | 4375243 |
Gene Length | 1779 bp |
Protein Length | 592 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641549052 |
Product | flagellar MS-ring protein |
Protein accession | YP_001670156 |
Protein GI | 167034925 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.105617 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 57 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTGAAG CAGTCGTCGA AAACGCCCCC GCCAAGGCTG GCTCGCCAGC GGCCAAGCCG CCGTTGTTTG GCATGGCGTT TCTGGAAAAC ATCTCGCAGA TGCCCATGCT GCGCCAGATT GGCCTCATGG TTGGTCTGGC GGCCAGCGTG GCCATTGGCT TTGCCGTGGT GCTGTGGTCG CAACAGCCCG ATTACCGTCC GTTGTACGGC AGCCTGTCGG GCATGGACAC CAAGCAGGTC ATGGATACCC TGGCCGCTGC AGACATCCCC TACAACGTGG AGCCCAACTC GGGTGCTCTG CTGGTCAAGG CCGACGACCT CTCCCGTGCG CGCCTGAAAC TGGCAGCCGC CGGCGTAGCG CCAAGCGACG GTAATGTCGG TTTCGAACTG CTCGACAAGG AGCAGGGCCT GGGCACCAGC CAGTTCATGG AGGCCACTCG CTACCGCCGC AGCCTCGAAG GCGAACTGGC GCGCACTGTT TCCAGCCTGA ACAACGTCAA GGCCGCGCGC GTGCACCTGG CTATCCCGAA AAGCTCGGTG TTCGTGCGTG ATGAGCGCAA GCCCAGCGCT TCGGTACTGG TCGAGTTGTA CCCGGGGCGC GCCTTGGAAG CCGGGCAGGT GATGGCCATC GTCAACCTGG TAGCCACCAG TGTGCCGGAA CTGGACAAAT CCCAGGTCAC CGTCGTCGAC CAGAAGGGCA ACCTGCTGTC CGAGCAGATC CAGGATTCAT CACTGACCCA AGCCGGCAAG CAGTTCGACT ACAGCCGCCG GGTAGAGAGC ATGCTCACCC AGCGTGTGCA CAACATCCTG CAGCCGGTGC TGGGCAACGA CCGTTACAAG GCCGAAGTGT CCGCCGACCT CGACTTCAGC GCGGTCGAGT CCACCTCCGA ACAGTTCAAT CCCGACCAGC CGGCACTGCG CAGCGAGCAG TCGGTCGATG AACAACGTGC CAGCAGCCAA GGCCCGCAAG GCGTGCCAGG CGCGCTGAGC AACCAGCCGC CGGGCGCCGC GTCGGCACCG CAAACCACCG GTGGCGCTGC CACGCCAGCT TCGGCCATTC AGCCGGGCCA GCCGCTGGTC GATGCCAACG GCCAGCAGAT CATGGACCCA GCCACCGGCC AGCCGATGCT CGCGCCGTAC CCGTCAGATA AACGTCAGCA AAGCACCAAG AACTTCGAAC TGGACCGTTC CATCAGCCAT ACCCGCCAGC AGCAAGGCCG CATGACCCGT CTGTCGGTGG CGGTGGTGGT GGACGATCAG GTCAAGCTCG ACCCTGCCAC GGGTGACGCC ACCCGTGCGC CGTGGGCTGC CGAGGACCTG GCGCGCTTTA CCCGCCTGGT GCAGGACGCC GTCGGCTTCG ATGCCAGCCG TGGCGACAGC GTGACGGTGA TCAACGTGCC GTTCGCCGCC GACCGTGGCG AGGAAATCGC CGACATCGCC TTCTACCAGC AGCCGTGGTT CTGGGACATC GTCAAGCAGG TGCTGGGTGT GGTGTTCATC CTGGTGCTGG TGTTCGGTGT GCTGCGGCCG GTGCTCAACA ATATTACAGG GGGCGGCAAG CAGGCTGCCT CGGATAGCGA CATGGAGCTG GGCGGCATGA TGGGTCTGGA TGGCGAGTTG GCCAACGACC GCGTCAGCCT GGGTGGCCCG ACAAGCATTC TGCTGCCTAG CCCGAGCGAG GGTTACGAGG CACAGCTCAA CGCAATCAAA GGCCTGGTGG CCGAAGACCC GGGCCGTGTC GCCCAGGTCG TGAAAGACTG GATCAACGCC GATGAGTGA
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Protein sequence | MAEAVVENAP AKAGSPAAKP PLFGMAFLEN ISQMPMLRQI GLMVGLAASV AIGFAVVLWS QQPDYRPLYG SLSGMDTKQV MDTLAAADIP YNVEPNSGAL LVKADDLSRA RLKLAAAGVA PSDGNVGFEL LDKEQGLGTS QFMEATRYRR SLEGELARTV SSLNNVKAAR VHLAIPKSSV FVRDERKPSA SVLVELYPGR ALEAGQVMAI VNLVATSVPE LDKSQVTVVD QKGNLLSEQI QDSSLTQAGK QFDYSRRVES MLTQRVHNIL QPVLGNDRYK AEVSADLDFS AVESTSEQFN PDQPALRSEQ SVDEQRASSQ GPQGVPGALS NQPPGAASAP QTTGGAATPA SAIQPGQPLV DANGQQIMDP ATGQPMLAPY PSDKRQQSTK NFELDRSISH TRQQQGRMTR LSVAVVVDDQ VKLDPATGDA TRAPWAAEDL ARFTRLVQDA VGFDASRGDS VTVINVPFAA DRGEEIADIA FYQQPWFWDI VKQVLGVVFI LVLVFGVLRP VLNNITGGGK QAASDSDMEL GGMMGLDGEL ANDRVSLGGP TSILLPSPSE GYEAQLNAIK GLVAEDPGRV AQVVKDWINA DE
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