Gene PputGB1_3892 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_3892 
Symbol 
ID5871686 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp4338465 
End bp4338920 
Gene Length456 bp 
Protein Length151 aa 
Translation table11 
GC content63% 
IMG OID641549014 
Productcytochrome c-type biogenesis protein CcmE 
Protein accessionYP_001670118 
Protein GI167034887 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG2332] Cytochrome c-type biogenesis protein CcmE 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.00332618 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones47 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAATCCGC AGCGCAAGAA ACGCCTGTTG CTCATCGTCG GCCTGCTGGT CGGCGTCGGG 
GTTGCCGTCG GCTTTGCCTT GAGCGCATTG CAGCAGAACA TCAACCTGTT CTACACACCG
ACCCAGATCG CCAACGGCGA AGCACCGCTG GACACGCGCA TCCGCGCTGG CGGCATGGTC
GAGAAAGGCT CGGTGCAACG TTCGTCCGAC TCACTGGACG TGCGCTTCGT GGTCACCGAC
TTCAACAAGT CGGTGCCGAT CACCTACCGT GGCATCCTGC CCGACCTGTT CCGTGAAGGG
CAGGGCATTG TCGCCCTTGG CAAGGTCAAC GCCGACGGCG TGGTGGTGGC CGATGAAGTG
CTGGCCAAGC ACGACGAGAA GTACATGCCG CCCGAGGTGA GCAAAGCCCT GAAAGAAAGC
GGCCAGGCCG CCACGGGCGG GGAGGCCAAG CCATGA
 
Protein sequence
MNPQRKKRLL LIVGLLVGVG VAVGFALSAL QQNINLFYTP TQIANGEAPL DTRIRAGGMV 
EKGSVQRSSD SLDVRFVVTD FNKSVPITYR GILPDLFREG QGIVALGKVN ADGVVVADEV
LAKHDEKYMP PEVSKALKES GQAATGGEAK P