Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_3856 |
Symbol | |
ID | 5871650 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 4301002 |
End bp | 4301784 |
Gene Length | 783 bp |
Protein Length | 260 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 641548978 |
Product | hypothetical protein |
Protein accession | YP_001670082 |
Protein GI | 167034851 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3248] Nucleoside-binding outer membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.00178481 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.564772 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTACCA TCAACAGCCT GATCCTTGCC GGCGGCCTGC TGGCCTGTGG CACCACCTTC GGCGGCGACC TGCTGCAATG GCAGAACAAC AGCCTGACCT ACCTGTGGGG CAAGAACTTC AAGGTCAACC CCGAAACCCA GCAAACCTTC ACCTTCGAGC ACGCCGACGC GTGGAAGTAC GGCGACAACT TCTTCTTCGT CGACAAGATC TTCTACCAGG GCAAGAAGGA CGCCAACAAC GGGCCCAACA CCTACTACGG CGAGTTCAGC CCACGCCTGT CGTTCGGCAA GATCTTCGAC CAGAAGCTGG AGTTCGGCCC GGTCAAGGAC GTGCTGCTGG CCATGACCTA CGAGTTTGGC GAGGGTGACA CCGAGTCGTA CCTGATCGGC CCAGGCTTCG ACCTGGCCAT CCCGGGCTTC GATTACTTCC AGCTCAACTT CTACAACCGC ACCACCGACG GCAGCCGCGC CGGCGACAAC GTATGGCAGA TCACCCCGGT ATGGTCGTAC ACCATCCCGG TCGGCGATTC CGACGTGCTG ATCGACGGCT TCATGGACTG GGTGGTGGAC AACGACGAGA ACCGCCACGG CACCTACCAG GCCAACCTGC ACTTCAACCC ACAGATCAAG TACGACCTGG GCAAGGCGTT GCACCTGGGC GAGAAGCAGC TGTACGTGGG TGTCGAGTAC GACTACTGGA AGAACAAATA CGGTATCAAG GACAGCGATG CCTTCACTAC CGACCAGAAC ACCATGAGTT TCCTGGTAAA AGTGCACTTC TGA
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Protein sequence | MRTINSLILA GGLLACGTTF GGDLLQWQNN SLTYLWGKNF KVNPETQQTF TFEHADAWKY GDNFFFVDKI FYQGKKDANN GPNTYYGEFS PRLSFGKIFD QKLEFGPVKD VLLAMTYEFG EGDTESYLIG PGFDLAIPGF DYFQLNFYNR TTDGSRAGDN VWQITPVWSY TIPVGDSDVL IDGFMDWVVD NDENRHGTYQ ANLHFNPQIK YDLGKALHLG EKQLYVGVEY DYWKNKYGIK DSDAFTTDQN TMSFLVKVHF
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