| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3838 |
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| Symbol | ligA |
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| ID | 5871632 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 4276283 |
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| End bp | 4278613 |
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| Gene Length | 2331 bp |
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| Protein Length | 776 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641548960 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_001670064 |
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| Protein GI | 167034833 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.771384 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCCG AAACCCGTAT CCATGAACTG CGTGCCGAAC TCGACCAGCA CAACTATCGC
TATTACGTGC TCGACGAGCC CAGCGTGCCC GATGCCGAAT ACGACCGCCT GTTCAACGAG
CTCAAGGCGT TGGAGGCTGA ACACCCCCAC CTGGTAACCC CCGATTCGCC AACCCAGCGC
GTCGGTGGCG AGGCTTTGTC TGCGTTCAGC CAGGTACGCC ACGAAGTGCC CATGCTCAGC
CTGGGCAACG CCTTTGAAGA AACCGACCTG CGCGAATTCG GCCGCCGCGT GGTTGAAGGC
CTCGACCAAC CCGGTGCGGT CGACTACAGC TGTAAACCCA AGCTCGATGG CTTGGCCGTG
AGCCTGTTGT ACCGCGATGG CCAGTTGGTG CAGGGCGCCA CCCGTGGCGA CGGTACCACC
GGCGAAGACA TCAGTGCCAA CGTGCGCACC GTGCGCAACA TCCCGCTCAA ACTGCAGGGC
GAGGGCTGGC CAGCAGTGCT GGAAGTGCGC GGCGAGGTGT ATATGAGCAA GGCCGGTTTC
GACCGGCTCA ATGCCGCTCA GGCCGAAGCC GGCGGCAAGA CCTTCGCCAA CCCGCGCAAC
GCTGCCGCCG GTAGCCTGCG CCAGCTGGAT TCGAAAATCA CCGCCAGCCG CCCGCTGGAG
TTCTGCTGCT ATGGCGTCGG CCAGGTGTCC GAGAGCATCG GCGACAGCCA TATCGGTGTC
CTCGAACAGC TCAAGGCCTG GGGCATGCCG ATCAGTCGCG AGCTCAGGCA TGCGGCGGGT
ATCGAAGAAT GCCTGGCCTA TTACCGCGAC ATTGGCGAGC GGCGTAACAG CCTGCCGTAT
GAGATCGACG GTGTGGTATT CAAGGTTAAC AACCTGGCTG CCCAGCGCGA ACTGGGCTTC
CGCGCCCGAG AGCCACGCTG GGCGATTGCC CACAAATTCC CAGCCATGGA AGAGCTGACC
GAGGTGCTGG ACGTCGAGTT CCAGGTTGGC CGTACCGGTG CGGTAACGCC TGTGGCACGC
CTGAAGCCGG TCAAGGTGGC CGGGGTAACC GTGTCCAACG CCACCCTGCA CAACATGGAC
GAAATCGCTC GGCTGGGCTT GCGCATTGGC GATACGGTGA TCATCCGCCG TGCCGGTGAC
GTGATCCCGC AGGTGATGCA GGTGGTGCTG GAGCGTCGCC CCGACGATGC CCGTCCGGTA
GAAGTGCCAA GCGCATGCCC GGTGTGTGGC TCGCAAGTCG AGCGTACCCA ACTGGTAAAG
CGCAGCAAGG GCAAGGAAAC CACCAGCGAA GGCGCGGTGT ACCGCTGCGT TGGTCGCCTG
GCCTGTGGCG CCCAGCTCAA GCAGGCGATC ATTCACTATG TGTCGCGCCG GGCCATGGAC
ATCGACGGCC TGGGCGAGAA GAGTGTCGAG CAGTTGGTGG ACGAAGGCCT GATCGGCTCG
CCGGCTGATC TGTACAAACT GGCGTTCGAG CAGATCGTTG GCCTTGAAGG CTTCGCCGAG
GTGTCCAGCA AGAAGTTGCT CGATGCCATT GAGGCCAGCA AGCGCCCGAG CCTGGCGCGG
TTCATCTACG CGTTGGGCAT TCCCGACGTA GGCGAAGAGA CCGCCAAGGT GCTGGCCCGC
TCGCTGGGCA GCTTGGCGCG TGTGCAGCAG GCACTGCCGC AAGTGCTGAC CTACTTGCCG
GATATCGGCC TGGAGGTGGC CTACGAAATC CATAATTTCT TCGAAGACGA GCACAACCAG
AAGGTCATTG AACAACTTCT GGCCAGTGGC ATGAAATTGC AGGACGAAGG CGAACTGGCT
GCCGAGTTCG CCGCCAGTAC TACCTTGGCT GGGATGATTG CCAAGCTCGA CATCGCCTCG
GTCGGCCCGA CCGGTGCCGA GAAGCTGGTG GCCAAGCTCG ACAGCCTGGA GAAGATCATC
GCCGCCGACG GCATCGACCT GCGCCAGGCC CTGGCGGCCA AGCAGGCTGA TGCTGTGCGT
GAGTTCTTCA AGGATGAAGC GAACCAGAAA CTGGCGCGGG ACATCGAAGC GCAGTTGCTG
GCGTTCGGCA TGCACTGGAG CTGCGAGAAG AAGGTTGCCG AAGGCTTGCC GCTGGCAGGC
CAGACCTGGG TGCTGACCGG CACGCTGGAA CGCATGAGCC GCGATATTGC CAAGGACAAG
CTGGAAAGCC TGGGGGCCAA GGTGGCGGGT TCGGTTTCTG GCAAGACCCA TTGCGTGGTG
GCAGGGCCGG GGGCGGGCTC CAAGCTGGCC AAGGCCAGCG AGCTGGGCGT GAAGGTGCTG
GATGAAGATG CATTCGTCAC ATTCCTGGCC GAGCAGGGCA TTGTTGTTTA G
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| Protein sequence | MTAETRIHEL RAELDQHNYR YYVLDEPSVP DAEYDRLFNE LKALEAEHPH LVTPDSPTQR
VGGEALSAFS QVRHEVPMLS LGNAFEETDL REFGRRVVEG LDQPGAVDYS CKPKLDGLAV
SLLYRDGQLV QGATRGDGTT GEDISANVRT VRNIPLKLQG EGWPAVLEVR GEVYMSKAGF
DRLNAAQAEA GGKTFANPRN AAAGSLRQLD SKITASRPLE FCCYGVGQVS ESIGDSHIGV
LEQLKAWGMP ISRELRHAAG IEECLAYYRD IGERRNSLPY EIDGVVFKVN NLAAQRELGF
RAREPRWAIA HKFPAMEELT EVLDVEFQVG RTGAVTPVAR LKPVKVAGVT VSNATLHNMD
EIARLGLRIG DTVIIRRAGD VIPQVMQVVL ERRPDDARPV EVPSACPVCG SQVERTQLVK
RSKGKETTSE GAVYRCVGRL ACGAQLKQAI IHYVSRRAMD IDGLGEKSVE QLVDEGLIGS
PADLYKLAFE QIVGLEGFAE VSSKKLLDAI EASKRPSLAR FIYALGIPDV GEETAKVLAR
SLGSLARVQQ ALPQVLTYLP DIGLEVAYEI HNFFEDEHNQ KVIEQLLASG MKLQDEGELA
AEFAASTTLA GMIAKLDIAS VGPTGAEKLV AKLDSLEKII AADGIDLRQA LAAKQADAVR
EFFKDEANQK LARDIEAQLL AFGMHWSCEK KVAEGLPLAG QTWVLTGTLE RMSRDIAKDK
LESLGAKVAG SVSGKTHCVV AGPGAGSKLA KASELGVKVL DEDAFVTFLA EQGIVV
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