Gene PputGB1_3762 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_3762 
SymbolsdhA 
ID5871555 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp4188054 
End bp4189826 
Gene Length1773 bp 
Protein Length590 aa 
Translation table11 
GC content61% 
IMG OID641548884 
Productsuccinate dehydrogenase flavoprotein subunit 
Protein accessionYP_001669988 
Protein GI167034757 
COG category[C] Energy production and conversion 
COG ID[COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 
TIGRFAM ID[TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTAGCA TTCCAACCAT TTCCTTCGAC GCCATCATCA TCGGTGGCGG CGGCGCCGGC 
ATGCGCGCAG CGCTGCAACT GGCTCAAGGC GGCCACAAGA CTGCCGTAGT CACCAAGGTC
TTCCCGACCC GTTCGCACAC TGTATCCGCC CAGGGCGGCA TCACCTGCGC CATCGCTTCG
GCCGACCCGA ACGACGACTG GCGCTGGCAC ATGTACGATA CCGTCAAGGG TTCCGACTAC
ATCGGTGACC AGGACGCTAT CGAATACATG TGTCAAGAAG GCCCGGCCGC GGTCTTCGAG
CTGGACCACA TGGGCTTGCC GTTCTCGCGT ACCGAAACCG GCCGTATCTA CCAGCGTCCG
TTCGGTGGCC AGTCCAAGGA TTACGGTAAG GGTGGCCAGG CTGCTCGTAC CTGTGCCGCT
TCCGACCGTA CCGGTCACGC GCTGCTGCAC ACCCTGTACC AGGGCAACCT GAAAGCCGGT
ACCACGTTCC TCAATGAGTA CTATGCCGTT GACCTGGTGA AAAACCAGGA AGGCGCCTTC
GTCGGTGTGA TCGCGATCTG CATCGAAACC GGCGAAACCA TGTACATCAA GTCCAAGGCC
ACCGTTCTGG CCACTGGCGG TGCGGGCCGT ATCTACGCCT CCACCACCAA CGCCCTGATC
AACACCGGTG ACGGTATCGG CATGGCCCTG CGTGCAGGCG TACCGGTGCA GGACATCGAA
ATGTGGCAGT TCCACCCAAC CGGCATCGCC GGCGCCGGTG TTCTGGTCAC CGAGGGTTGC
CGCGGTGAAG GTGGCTACCT GATCAACGCC CACGGCGAGC GCTTCATGGA GCGTTACGCG
CCGAACGCGA AAGACCTGGC CGGCCGCGAC GTGGTTGCCC GTTCCATGGT CAAGGAAATC
ATCGCCGGCA ACGGCGTGGG CCCGAACAAG GACCACGTAC TGCTGAAGCT GGACCACCTG
GGCGAGGAAG TGCTGCACAG CCGCCTGCCA GGTATCTGCG AACTGTCCAA AACCTTCGCT
CACGTCGACC CTGTCGTCGC GCCGGTTCCG GTCGTTCCAA CCTGCCACTA CATGATGGGC
GGCGTTGCCA CCAACATTCA TGGCCAGGCC ATCACCATGG ACGAAGAAGG CAAGGATCAC
ATCATCCCTG GCCTGTTCGC TGTTGGTGAA GTGGCGTGCG TATCGGTTCA CGGTGCCAAC
CGTCTGGGCG GCAACTCGCT GCTCGACCTG GTGGTGTTCG GCCGTGCTGC CGGCCTGCAC
CTGGAGAAGG CGCTGAGCGA CGGCATCGAG CATCTGGACG CCAGCGACAC CGACATCGAT
GTTGCCCTCA ACCGCCTGAA CAAGCTCAAC GAGCGCACCA CTGGCGAAGA CGTTGCCAGC
CTGAAGCGCG AGCTGCAAAG CTGCATGCAG AACTACTTCG GTGTATTCCG TACTGGCGAA
TACATGCAGA AGGGTATCGA GCAGCTGGCG GGTCTGCGTG ACCGTATCGC CAACGTCAAG
ATCAATGACA AGTCCCAGGC CTTCAACACC GCGCGTATCG AAGCGCTGGA GCTGCAGAAC
CTGCTGGAAG TTGCCGAAGC TACCGCCATC GCGGCCGAAG CCCGTAAAGA GTCCCGCGGC
GCTCACGCCC GTGAAGACTT CGAAGACCGT GACGACGAAA ACTGGCTGTG CCACACCCTG
TACTACCCGG GTGAGAAGCG CGTTGCCAAG CGCGGCGTCA ACTTTGCGCC GAAGACTGTT
CCAGCCTTCG AACCAAAAGT CCGGACTTAC TAA
 
Protein sequence
MASIPTISFD AIIIGGGGAG MRAALQLAQG GHKTAVVTKV FPTRSHTVSA QGGITCAIAS 
ADPNDDWRWH MYDTVKGSDY IGDQDAIEYM CQEGPAAVFE LDHMGLPFSR TETGRIYQRP
FGGQSKDYGK GGQAARTCAA SDRTGHALLH TLYQGNLKAG TTFLNEYYAV DLVKNQEGAF
VGVIAICIET GETMYIKSKA TVLATGGAGR IYASTTNALI NTGDGIGMAL RAGVPVQDIE
MWQFHPTGIA GAGVLVTEGC RGEGGYLINA HGERFMERYA PNAKDLAGRD VVARSMVKEI
IAGNGVGPNK DHVLLKLDHL GEEVLHSRLP GICELSKTFA HVDPVVAPVP VVPTCHYMMG
GVATNIHGQA ITMDEEGKDH IIPGLFAVGE VACVSVHGAN RLGGNSLLDL VVFGRAAGLH
LEKALSDGIE HLDASDTDID VALNRLNKLN ERTTGEDVAS LKRELQSCMQ NYFGVFRTGE
YMQKGIEQLA GLRDRIANVK INDKSQAFNT ARIEALELQN LLEVAEATAI AAEARKESRG
AHAREDFEDR DDENWLCHTL YYPGEKRVAK RGVNFAPKTV PAFEPKVRTY